fix paths

openproblems-bio · Nov 19, 2024 · 549955c · 549955c
1 parent 7d92211
commit 549955c
Show file tree

Hide file tree

Showing 4 changed files with 6 additions and 6 deletions.
diff --git a/scripts/create_resources/test_resources.sh b/scripts/create_resources/test_resources.sh
@@ -109,6 +109,6 @@ viash run src/data_processors/process_dataset/config.vsh.yaml -- \
 # HERE
 
 # # only run this if you have access to the openproblems-data bucket
-# aws s3 sync --profile op \
-#   "$DATASET_DIR" s3://openproblems-data/resources_test/task_cyto_batch_integration \
-#   --delete --dryrun
+aws s3 sync --profile op \
+  "$DATASET_DIR" s3://openproblems-data/resources_test/task_cyto_batch_integration \
+  --delete --dryrun
diff --git a/src/api/file_unintegrated.yaml b/src/api/file_unintegrated.yaml
@@ -1,6 +1,6 @@
 #TODO: Change to the required and/or optional fields of the anndata
 type: file
-example: "resources_test/task_cyto_batch_integration/cxg_mouse_pancreas_atlas/train.h5ad"
+example: "resources_test/task_cyto_batch_integration/starter_file/unintegrated.h5ad"
 label: "Unintegrated"
 summary: "Unintegrated dataset"
 

diff --git a/src/api/file_unintegrated_censored.yaml b/src/api/file_unintegrated_censored.yaml
@@ -1,6 +1,6 @@
 #TODO: Change to the required and/or optional fields of the anndata
 type: file
-example: "resources_test/task_cyto_batch_integration/cxg_mouse_pancreas_atlas/train.h5ad"
+example: "resources_test/task_cyto_batch_integration/starter_file/unintegrated_censored.h5ad"
 label: "Unintegrated Censored"
 summary: "Unintegrated dataset"
 info:

diff --git a/src/api/file_validation.yaml b/src/api/file_validation.yaml
@@ -1,5 +1,5 @@
 type: file
-example: "resources_test/task_cyto_batch_integration/cxg_mouse_pancreas_atlas/solution.h5ad"
+example: "resources_test/task_cyto_batch_integration/starter_file/validation.h5ad"
 label: Validation
 summary: Hold-out dataset for validation. 
 description: |