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initial commit, doesnt work yet: issues with incidence proportion (re… #21

Merged
merged 20 commits into from
Feb 9, 2024
Merged

initial commit, doesnt work yet: issues with incidence proportion (re… #21

merged 20 commits into from
Feb 9, 2024

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kuenzelt
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@kuenzelt kuenzelt commented Feb 5, 2024

Issues with incidence proportions, always returns 1,0.

@kuenzelt kuenzelt self-assigned this Feb 5, 2024
@kuenzelt kuenzelt linked an issue Feb 5, 2024 that may be closed by this pull request
Add vignette showing the full savvyr workflow #15
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github-actions bot commented Feb 5, 2024 •
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Code Coverage Summary

Filename                      Stmts    Miss  Cover    Missing
--------------------------  -------  ------  -------  ---------
R/aalen_johansen.R               65       0  100.00%
R/generate_data.R                27       0  100.00%
R/inc_prop.R                     10       0  100.00%
R/one_minus_kaplan_meier.R       24       0  100.00%
R/prop_trans_inc_dens_ce.R       26       0  100.00%
R/prop_trans_inc_dens.R          13       0  100.00%
TOTAL                           165       0  100.00%

Diff against main

Filename      Stmts    Miss  Cover
----------  -------  ------  --------
TOTAL             0       0  +100.00%

Results for commit: 41357f4

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

danielinteractive and others added 6 commits February 6, 2024 13:51
@danielinteractive
Merge branch 'main' into 15-add-vignette-showing-the-full-savvyr-work…
8f291c1 
…flow
removed packages
1b801c7
pulled from main
d2bf8f3 
Merge branch '15-add-vignette-showing-the-full-savvyr-workflow' of https://github.com/openpharma/savvyr into 15-add-vignette-showing-the-full-savvyr-workflow

# Conflicts:
#	vignettes/savvyr_example.Rmd
added kable package
57dae49
updated references
4fc6d28
adapted references
8c5bb43
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github-actions bot commented Feb 7, 2024 •
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Unit Tests Summary

 1 files   6 suites   1s ⏱️
10 tests 10 ✅ 0 💤 0 ❌
13 runs  13 ✅ 0 💤 0 ❌

Results for commit 41357f4.

♻️ This comment has been updated with latest results.

danielinteractive
danielinteractive reviewed Feb 8, 2024
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Kuenzel and others added 6 commits February 8, 2024 17:28
removed comments in code and added as text.
146e6b7
removed comments in code, added text
d66460a 
Merge branch '15-add-vignette-showing-the-full-savvyr-workflow' of https://github.com/openpharma/savvyr into 15-add-vignette-showing-the-full-savvyr-workflow

# Conflicts:
#	vignettes/savvyr_example.Rmd
@kuenzelt
Merge d66460a into 1f86cc8
10a5242
@github-actions
[skip actions] Restyle files
9ef9d67
considered line length
d7e99c0
minor updates
8902b1a
danielinteractive
danielinteractive approved these changes Feb 9, 2024
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Looks very nice, thanks @kuenzelt !

Kuenzel and others added 4 commits February 9, 2024 14:36
reformatting
1d5bc07 
Merge branch '15-add-vignette-showing-the-full-savvyr-workflow' of https://github.com/openpharma/savvyr into 15-add-vignette-showing-the-full-savvyr-workflow

# Conflicts:
#	vignettes/savvyr_example.Rmd
add rmarkdown
e0f8e8b
Merge branch '15-add-vignette-showing-the-full-savvyr-workflow' of gi…
642104f 
…thub.com:openpharma/savvyr into 15-add-vignette-showing-the-full-savvyr-workflow
one more pkg missing
41357f4
@danielinteractive danielinteractive enabled auto-merge (squash) February 9, 2024 13:54
@danielinteractive danielinteractive merged commit 5d13b70 into main Feb 9, 2024
23 checks passed
@danielinteractive danielinteractive deleted the 15-add-vignette-showing-the-full-savvyr-workflow branch February 9, 2024 13:56
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Add vignette showing the full savvyr workflow
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