Merge pull request #83 from Gilead-BioStats/resubmission

updated for resubmission

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: graphicalMCP
 Title: Graphical Multiple Comparison Procedures
-Version: 0.2.1
+Version: 0.2.2
 Authors@R: c(
     person("Dong", "Xi", , "[email protected]", role = c("aut", "cre")),
     person("Ethan", "Brockmann", , "[email protected]", role = "aut"),

NEWS.md

@@ -21,3 +21,8 @@
 
 * Corrected typos
 * First CRAN release
+
+# graphicalMCP 0.2.2
+
+* Updated citations
+* Resubmission for first CRAN release

R/as_graph.R

@@ -28,8 +28,8 @@
 #' @export
 #'
 #' @references
-#'  Cs{\'a}rdi, G., Nepusz, T., Traag, V., Horv{\'a}t, S., Zanini, F., Noom, D.,
-#'  and M{\"u}ller, K. (2024). \emph{igraph}: Network analysis and visualization
+#'  Csardi, G., Nepusz, T., Traag, V., Horvat, S., Zanini, F., Noom, D.,
+#'  and Mueller, K. (2024). \emph{igraph}: Network analysis and visualization
 #'  in R. R package version 2.0.3. \url{https://CRAN.R-project.org/package=igraph}.
 #'
 #'  Rohmeyer, K., and Klinglmueller, K. (2024). \emph{gMCP}: Graph based

R/graph_calculate_power.R

@@ -143,13 +143,14 @@
 #'
 #' # Parametric tests for H1 and H2; Simes tests for H3 and H4
 #' # User-defined success: to reject H1 or H2; to reject H1 and H2
+#' # Reduce the number of simulations to save time for package compilation
 #' graph_calculate_power(
 #'   g,
 #'   alpha,
 #'   test_groups = list(1:2, 3:4),
 #'   test_types = c("parametric", "simes"),
 #'   test_corr = list(corr1, NA),
-#'   sim_n = 1e5,
+#'   sim_n = 1e3,
 #'   sim_success = list(
 #'     function(.) .[1] || .[2],
 #'     function(.) .[1] && .[2]

codemeta.json

@@ -7,7 +7,7 @@
   "codeRepository": "https://github.com/Gilead-BioStats/graphicalMCP",
   "issueTracker": "https://github.com/Gilead-BioStats/graphicalMCP/issues",
   "license": "Apache License 2",
-  "version": "0.2.1",
+  "version": "0.2.2",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -312,11 +312,11 @@
     },
     "SystemRequirements": null
   },
-  "fileSize": "713.418KB",
+  "fileSize": "713.292KB",
   "citation": [
     {
       "@type": "SoftwareSourceCode",
-      "datePublished": "2023",
+      "datePublished": "2024",
       "author": [
         {
           "@type": "Person",
@@ -329,9 +329,8 @@
           "familyName": "Brockmann"
         }
       ],
-      "name": "{graphicalMCP}: Graph-based multiple comparison procedures.",
-      "url": "https://github.com/Gilead-BioStats/graphicalMCP",
-      "description": "version 0.1.0"
+      "name": "{graphicalMCP}: Graphical multiple comparison procedures",
+      "url": "https://github.com/Gilead-BioStats/graphicalMCP"
     }
   ],
   "relatedLink": "https://gilead-biostats.github.io/graphicalMCP/",

cran-comments.md

@@ -1,5 +1,19 @@
+# Version 0.2.2
+
+- This is the second submission to CRAN.
+  + Updated citations to correct three notes.
+  + Reduced the number of simulations in the example for `graph_calculate_power`
+    to correct one note regarding long run time.
+
+## R CMD check results
+
+0 errors | 0 warnings | 0 notes
+
+# Version 0.2.1
+
+- This is a new release and the first submission to CRAN.
+
 ## R CMD check results
 
 0 errors | 0 warnings | 0 notes
 
-* This is a new release.

inst/CITATION

@@ -1,15 +1,10 @@
 citHeader("To cite graphicalMCP in publications use:")
 
-citEntry(
-  entry        = "manual",
-  title        = "{graphicalMCP}: Graph-based multiple comparison procedures.",
-  author       = c("Dong Xi", "Ethan Brockmann"),
-  organization = "Gilead Sciences, Inc",
-  note         = "version 0.1.0",
-  year         = "2023",
-  url          = "https://github.com/Gilead-BioStats/graphicalMCP",
-  textVersion = paste("Xi, D.; Brockmann, E. (2023).",
-        "graphicalMCP: Graph-based multiple comparison procedures.",
-        "version 0.1.0. Gilead Sciences, Inc. Foster City, California.",
-        "https://github.com/Gilead-BioStats/graphicalMCP")
+bibentry(
+  "manual",
+  title   = "{graphicalMCP}: Graphical multiple comparison procedures",
+  author  = as.person("Dong Xi and Ethan Brockmann"),
+  edition = "version 0.2.2",
+  year    = 2024,
+  url     = "https://github.com/Gilead-BioStats/graphicalMCP"
 )