Added a test to ensure nan is replaced with 255 at level3 #875
Workflow file for this run
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| name: Run Code Checks | |
| on: | |
| push: | |
| branches-ignore: [develop] | |
| paths: | |
| - '**' | |
| - '!docker/**' | |
| - '!.github/workflows/statistician-*' | |
| - '!notebooks/**' | |
| - '!docs/**' | |
| - '!k8s/**' | |
| - '!README.md' | |
| tags: | |
| - '**' | |
| workflow_run: | |
| workflows: ["Create a new tag"] | |
| types: | |
| - completed | |
| permissions: | |
| contents: read | |
| packages: read | |
| jobs: | |
| build-wheels: | |
| if: | | |
| github.event_name == 'push' || (github.ref == 'refs/heads/develop' | |
| && github.event.workflow_run.conclusion == 'success') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/cache@v4 | |
| id: wheels_cache | |
| with: | |
| path: ./wheels | |
| key: wheels-${{ github.sha }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade \ | |
| setuptools \ | |
| setuptools-scm | |
| python -m pip install --upgrade \ | |
| toml \ | |
| wheel \ | |
| twine \ | |
| packaging | |
| python -m pip freeze | |
| - name: Build Clean Packages | |
| run: | | |
| mkdir -p ./wheels/clean | |
| python setup.py bdist_wheel --dist-dir ./wheels/clean/ | |
| python setup.py sdist --dist-dir ./wheels/clean/ | |
| find ./wheels/clean -type f | |
| test-wheels: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/${{ github.repository }}:latest | |
| credentials: | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| services: | |
| postgres: | |
| image: postgis/postgis:10-2.5 | |
| env: | |
| POSTGRES_DB: opendatacube | |
| POSTGRES_PASSWORD: opendatacubepassword | |
| POSTGRES_USER: opendatacube | |
| needs: | |
| - build-wheels | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Dependencies | |
| shell: bash | |
| run: | | |
| apt update | |
| DEBIAN_FRONTEND=noninteractive apt-get install -y \ | |
| --fix-missing --no-install-recommends \ | |
| nodejs \ | |
| zstd | |
| python -m pip install --upgrade --no-cache pip | |
| pip install --upgrade --no-cache -r \ | |
| tests/requirements.txt | |
| pip freeze | |
| - name: Get Wheels from Cache | |
| uses: actions/cache@v4 | |
| id: wheels_cache | |
| with: | |
| path: ./wheels | |
| key: wheels-${{ github.sha }} | |
| - name: Install wheels for testing | |
| shell: bash | |
| run: | | |
| which python | |
| which datacube | |
| ls -lh wheels/clean | |
| pip install --no-deps --no-cache wheels/clean/*whl | |
| pip check || true | |
| pip show odc-stats | |
| which odc-stats | xargs ls -alt | |
| odc-stats --version | |
| - name: Run Tests | |
| shell: bash | |
| run: | | |
| echo "Init DB" | |
| ./tests/init_db.sh | |
| echo "Running unit tests" | |
| pytest --cov=. \ | |
| --cov-report=html \ | |
| --cov-report=xml:coverage.xml \ | |
| --timeout=30 tests | |
| echo "Running integration tests" | |
| ./tests/integration_test.sh | |
| env: | |
| DB_HOSTNAME: postgres | |
| DB_USERNAME: opendatacube | |
| DB_PASSWORD: opendatacubepassword | |
| DB_DATABASE: opendatacube | |
| AWS_NO_SIGN_REQUEST: true | |
| AWS_DEFAULT_REGION: ap-southeast-2 | |
| AWS_REGION: ap-southeast-2 | |
| STAC_API_URL: https://earth-search.aws.element84.com/v0/ | |
| GDAL_HTTP_MAX_RETRY: 5 | |
| - name: Upload Coverage | |
| if: | | |
| github.repository == 'opendatacube/odc-stats' | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: false | |
| verbose: false |