First draft of top level masking functions for bitmask and enumerated… #1025
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| name: Run Code Checks | |
| on: | |
| pull_request: | |
| push: | |
| jobs: | |
| build-wheels: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - uses: actions/cache@v4 | |
| id: wheels_cache | |
| with: | |
| path: ./wheels | |
| key: wheels-${{ github.sha }} | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade setuptools | |
| python -m pip install --upgrade \ | |
| toml \ | |
| wheel \ | |
| packaging \ | |
| twine | |
| python -m pip freeze | |
| - name: Build Clean Packages | |
| run: | | |
| mkdir -p ./wheels/clean | |
| python setup.py bdist_wheel --dist-dir ./wheels/clean/ | |
| python setup.py sdist --dist-dir ./wheels/clean/ | |
| find ./wheels/clean -type f | |
| - name: Patch Package Versions | |
| run: | | |
| find . -name _version.py | xargs python ./scripts/patch_version.py ${GITHUB_RUN_NUMBER:-0} | |
| - name: Build Dev Packages | |
| run: | | |
| mkdir -p ./wheels/dev | |
| python setup.py bdist_wheel --dist-dir ./wheels/dev/ | |
| python setup.py sdist --dist-dir ./wheels/dev/ | |
| find ./wheels/dev -type f | |
| build-test-env-base: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/cache@v4 | |
| id: conda_cache | |
| with: | |
| path: /tmp/test_env | |
| key: ${{ runner.os }}-test-env-py310-${{ hashFiles('tests/test-env-py310.yml') }} | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| if: steps.conda_cache.outputs.cache-hit != 'true' | |
| with: | |
| miniforge-version: latest | |
| activate-environment: "" | |
| - name: Dump Conda Environment Info | |
| shell: bash -l {0} | |
| if: steps.conda_cache.outputs.cache-hit != 'true' | |
| run: | | |
| conda info | |
| conda list | |
| mamba --version | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: Build Python Environment for Testing | |
| shell: bash -l {0} | |
| if: steps.conda_cache.outputs.cache-hit != 'true' | |
| run: | | |
| mamba env create -f tests/test-env-py310.yml -p /tmp/test_env | |
| - name: Check Python Env | |
| shell: bash -l {0} | |
| if: steps.conda_cache.outputs.cache-hit != 'true' | |
| run: | | |
| mamba env export -p /tmp/test_env | |
| run-black-check: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-test-env-base | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get Conda Environment from Cache | |
| uses: actions/cache@v4 | |
| id: conda_cache | |
| with: | |
| path: /tmp/test_env | |
| key: ${{ runner.os }}-test-env-py310-${{ hashFiles('tests/test-env-py310.yml') }} | |
| - name: Update PATH | |
| shell: bash | |
| run: | | |
| echo "/tmp/test_env/bin" >> $GITHUB_PATH | |
| - name: Check formatting (black) | |
| shell: bash | |
| run: | | |
| black --check . | |
| run-pylint: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-test-env-base | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get Conda Environment from Cache | |
| uses: actions/cache@v4 | |
| id: conda_cache | |
| with: | |
| path: /tmp/test_env | |
| key: ${{ runner.os }}-test-env-py310-${{ hashFiles('tests/test-env-py310.yml') }} | |
| - name: Update PATH | |
| shell: bash | |
| run: | | |
| echo "/tmp/test_env/bin" >> $GITHUB_PATH | |
| - name: Install in Edit mode | |
| shell: bash | |
| run: | | |
| pip install -e . --no-deps | |
| - name: Check with pylint | |
| shell: bash | |
| run: | | |
| pylint -v odc | |
| run-mypy: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-test-env-base | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get Conda Environment from Cache | |
| uses: actions/cache@v4 | |
| id: conda_cache | |
| with: | |
| path: /tmp/test_env | |
| key: ${{ runner.os }}-test-env-py310-${{ hashFiles('tests/test-env-py310.yml') }} | |
| - name: Update PATH | |
| shell: bash | |
| run: | | |
| echo "/tmp/test_env/bin" >> $GITHUB_PATH | |
| - name: Check with mypy | |
| shell: bash | |
| run: | | |
| mypy odc | |
| test-with-coverage: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-test-env-base | |
| - run-black-check | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get Conda Environment from Cache | |
| uses: actions/cache@v4 | |
| id: conda_cache | |
| with: | |
| path: /tmp/test_env | |
| key: ${{ runner.os }}-test-env-py310-${{ hashFiles('tests/test-env-py310.yml') }} | |
| - name: Update PATH | |
| shell: bash | |
| run: | | |
| echo "/tmp/test_env/bin" >> $GITHUB_PATH | |
| - name: Install in Edit mode | |
| shell: bash | |
| run: | | |
| pip install -e . --no-deps | |
| - name: Run Tests | |
| shell: bash | |
| run: | | |
| echo "Running Tests" | |
| pytest --cov=odc \ | |
| --cov-report=html \ | |
| --cov-report=term \ | |
| --cov-report=xml:coverage.xml \ | |
| --timeout=30 \ | |
| tests | |
| env: | |
| DASK_TEMPORARY_DIRECTORY: /tmp/dask | |
| - name: Upload Coverage | |
| if: | | |
| github.repository == 'opendatacube/odc-geo' | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: false | |
| verbose: false | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| test-wheels: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-test-env-base | |
| - run-black-check | |
| - build-wheels | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get Wheels from Cache | |
| uses: actions/cache@v4 | |
| id: wheels_cache | |
| with: | |
| path: ./wheels | |
| key: wheels-${{ github.sha }} | |
| - name: Get Conda Environment from Cache | |
| uses: actions/cache@v4 | |
| id: conda_cache | |
| with: | |
| path: /tmp/test_env | |
| key: ${{ runner.os }}-test-env-py310-${{ hashFiles('tests/test-env-py310.yml') }} | |
| - name: Update PATH | |
| shell: bash | |
| run: | | |
| echo "/tmp/test_env/bin" >> $GITHUB_PATH | |
| - name: Install wheels for testing | |
| shell: bash | |
| run: | | |
| which python | |
| ls -lh wheels/clean | |
| python -m pip install --no-deps wheels/clean/*whl | |
| python -m pip check || true | |
| - name: Run Tests | |
| shell: bash | |
| run: | | |
| echo "Running Tests" | |
| pytest --timeout=30 tests | |
| env: | |
| DASK_TEMPORARY_DIRECTORY: /tmp/dask | |
| check-docs: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-test-env-base | |
| - run-black-check | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get Conda Environment from Cache | |
| uses: actions/cache@v4 | |
| id: conda_cache | |
| with: | |
| path: /tmp/test_env | |
| key: ${{ runner.os }}-test-env-py310-${{ hashFiles('tests/test-env-py310.yml') }} | |
| - name: Update PATH | |
| shell: bash | |
| run: | | |
| echo "/tmp/test_env/bin" >> $GITHUB_PATH | |
| - name: Install in Edit mode | |
| shell: bash | |
| run: | | |
| pip install -e . --no-deps | |
| - name: Build docs | |
| shell: bash | |
| run: | | |
| make -C docs html | |
| - name: Deploy to Netlify | |
| id: netlify | |
| if: github.event_name == 'pull_request' | |
| uses: nwtgck/actions-netlify@v3 | |
| with: | |
| production-branch: "main" | |
| publish-dir: "docs/_build/html" | |
| deploy-message: "Deploy from GitHub Actions" | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| enable-pull-request-comment: true | |
| enable-commit-comment: false | |
| env: | |
| NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }} | |
| NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }} | |
| - name: Print Notice | |
| uses: actions/github-script@v7 | |
| if: github.event_name == 'pull_request' | |
| env: | |
| NETLIFY_URL: ${{ steps.netlify.outputs.deploy-url }} | |
| with: | |
| script: | | |
| const {NETLIFY_URL} = process.env | |
| core.notice(`Published to: ${NETLIFY_URL}`) |