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update zenodo id for supporting cross analysis
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ShixiangWang committed Jul 25, 2024
1 parent 319791e commit 94fd1e9
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4 changes: 2 additions & 2 deletions R/load_data.R
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#' - `TCGA.organ`: TCGA organ data.
#' - `toil_info`: Toil hub information.
#'
#' **Remote datasets stored in [Zenodo](https://zenodo.org/record/12525057/)**:
#' **Remote datasets stored in [Zenodo](https://zenodo.org/record/12819839/)**:
#' - `pcawg_promoter_id`: PCAWG promoter identifiers.
#' - `transcript_identifier`: Common transcript identifiers.
#' - `ccle_expr_and_drug_response`: CCLE expression and drug response data.
Expand Down Expand Up @@ -79,7 +79,7 @@ load_data <- function(name) {
if (!file.exists(data_path)) {
# Download it to inst/extdata from zenodo
# Then load it
data_url <- file.path("https://zenodo.org/record/12525057/files", name2)
data_url <- file.path("https://zenodo.org/record/12819839/files", name2)
if (tryCatch(httr::status_code(httr::HEAD(data_url)),
error = function(e) 404
) != 200) {
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2 changes: 1 addition & 1 deletion inst/shinyapp/shiny-doc/datasets.md
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@@ -1,6 +1,6 @@
<center> <h2> Extra Datasets </h2> </center>

Extra datasets cleaned from UCSCXena hubs or references are deposited in [Zenodo repo](https://zenodo.org/record/12525057).
Extra datasets cleaned from UCSCXena hubs or references are deposited in [Zenodo repo](https://zenodo.org/record/12819839).

You can download them directly from the Zenodo repo or using `get_data()` function provided in UCSCXenaShiny R package.

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2 changes: 1 addition & 1 deletion man/load_data.Rd

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