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v1.1.2 - drop cython-generated .c/.cpp files from the sdist #258

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Dec 11, 2024
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c2ca148
cibuildwheel first try
golobor Sep 16, 2024
26c3530
Merge branch 'open2c:master' into master
golobor Sep 16, 2024
ab43a22
cibuildwheels add pysam
golobor Sep 16, 2024
00464c6
cibuildwheel add bzip dep
golobor Sep 16, 2024
800207a
cibuildwheel update deps
golobor Sep 16, 2024
f83de45
cibuildwheel add -y option
golobor Sep 16, 2024
64f2e93
cibuildwheel add xz-devel
golobor Sep 16, 2024
313713c
cibuildwheel python version
golobor Sep 17, 2024
1568d45
cibuildwheel update toml
golobor Sep 17, 2024
1d3ce54
cibuildwheel toml
golobor Sep 17, 2024
5ec7d02
drop support for py3.7
golobor Sep 17, 2024
4ede69c
cibuildwheel fix toml
golobor Sep 17, 2024
a8c9542
update toml
golobor Sep 17, 2024
caaca5d
setup.py : do not updaste __NUMPY_SETUP_
golobor Sep 17, 2024
510f99c
fix setup.py
golobor Sep 17, 2024
35754ac
attempt to fix repair wheel
golobor Oct 7, 2024
94655b2
fix
golobor Oct 7, 2024
2368bde
fix
golobor Oct 7, 2024
c210cde
fix
golobor Oct 7, 2024
a792104
fix
golobor Oct 7, 2024
c135113
attempt to fix pysam install
golobor Nov 18, 2024
136d44d
fix pysam
golobor Nov 19, 2024
35b95eb
fix pysam #2
golobor Nov 19, 2024
c795dde
fix pysam
golobor Nov 19, 2024
24b8c95
bump py version
golobor Nov 19, 2024
a0c2d0a
fix pysam
golobor Nov 19, 2024
93bfddc
ciwheel: lower version
golobor Nov 19, 2024
9ae65e6
another attempt at cibw
golobor Nov 19, 2024
968cd38
cibuildwheel fix
golobor Nov 19, 2024
0696a23
cibuildwheel
golobor Nov 19, 2024
f792309
cibuildwheel
golobor Nov 19, 2024
ae42407
cibuildwheel fix
golobor Nov 19, 2024
cce89a7
cibuildwheel
golobor Nov 19, 2024
2669f2c
cibuildwheel
golobor Nov 19, 2024
371865f
last fix?..
golobor Dec 2, 2024
700ecb6
last last fix?
golobor Dec 2, 2024
5f87d21
fix
golobor Dec 2, 2024
ae823c2
fix py>=3.11
golobor Dec 2, 2024
c0836e3
test
golobor Dec 2, 2024
0529e11
test
golobor Dec 2, 2024
b5df8ad
test
golobor Dec 2, 2024
4010500
another test
golobor Dec 2, 2024
3a56120
Merge branch 'open2c:master' into master
golobor Dec 9, 2024
a1d0b75
fix
golobor Dec 9, 2024
bec3862
Merge branch 'master' of https://github.com/golobor/pairtools
golobor Dec 9, 2024
36c04f0
drop 32-bit
golobor Dec 9, 2024
e6aaf63
fix using pysam.whl
golobor Dec 9, 2024
39298dc
add pysam dependency?..
golobor Dec 9, 2024
b866db2
pysam no-binary
golobor Dec 9, 2024
a82edeb
migrate all dependencies to pyproject toml
golobor Dec 9, 2024
1dda01a
update actions and readme
golobor Dec 9, 2024
21d7550
fix testing action
golobor Dec 9, 2024
8740a59
add verbosity to tests
golobor Dec 9, 2024
bb1f901
install cython explicitly
golobor Dec 9, 2024
b479d06
install pysam and numpy in testing
golobor Dec 9, 2024
f94ea83
test no nobinary
golobor Dec 9, 2024
02b0906
fix
golobor Dec 9, 2024
1973097
fix
golobor Dec 9, 2024
8be8414
add auditwheel verbosity
golobor Dec 9, 2024
c08f0f1
fix
golobor Dec 9, 2024
c2bc7f0
fix
golobor Dec 9, 2024
aa6cb4f
fix
golobor Dec 9, 2024
95cf668
drop auditwheel verbosity
golobor Dec 9, 2024
f02684e
fix
golobor Dec 9, 2024
8afb599
update docs
golobor Dec 10, 2024
82502d7
fix
golobor Dec 10, 2024
be47431
fix
golobor Dec 10, 2024
df8c2ad
update the test action
golobor Dec 10, 2024
be9409d
fix
golobor Dec 10, 2024
c0b8487
update build
golobor Dec 10, 2024
ee95045
change output location
golobor Dec 10, 2024
0d63ec6
fix a bug in groupby
golobor Dec 10, 2024
17f2c14
test publish action
golobor Dec 10, 2024
6abc6be
publishing scripts
golobor Dec 10, 2024
baeede4
update test publish
golobor Dec 10, 2024
d6268d7
update publish action
golobor Dec 10, 2024
81b3bcb
fix readthedoc reqs
golobor Dec 10, 2024
30ffc5e
Merge branch 'master' of https://github.com/golobor/pairtools
golobor Dec 10, 2024
daa30d4
bump version
golobor Dec 10, 2024
d35c5c2
Merge branch 'master' of https://github.com/golobor/pairtools
golobor Dec 11, 2024
688a3d0
Merge branch 'master' of https://github.com/golobor/pairtools
golobor Dec 11, 2024
310794a
v1.1.2
golobor Dec 11, 2024
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5 changes: 5 additions & 0 deletions CHANGES.md
Original file line number Diff line number Diff line change
@@ -1,3 +1,8 @@
### 1.1.2 (2024-12-11) ###

Bugfixes:
- Drop Cython-generated .c/.cpp files from the sdist

### 1.1.1 (2024-12-10) ###

Bugfixes:
Expand Down
8 changes: 5 additions & 3 deletions MANIFEST.in
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
include CHANGES.md
include README.md
include requirements.txt
include requirements_doc.txt
include CHANGES.md
include LICENSE
include pyproject.toml
include pytest.ini

graft tests
graft doc
Expand All @@ -11,6 +11,8 @@ prune doc/_templates

global-include *.pyx
global-include *.pxd
global-exclude *.c
global-exclude *.cpp

global-exclude __pycache__/*
global-exclude *.so
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2 changes: 1 addition & 1 deletion pairtools/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -10,6 +10,6 @@

"""

__version__ = "1.1.1"
__version__ = "1.1.2"

# from . import lib
2 changes: 1 addition & 1 deletion setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@
from Cython.Distutils import build_ext as _build_ext
from Cython.Build import cythonize
except ImportError:
raise ImportError('Cython is required to build the extension modules.')
raise ImportError('Cython is now required to build the extension modules.')


def _read(*parts, **kwargs):
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