Build wheels #2
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| name: Build wheels | |
| on: [workflow_dispatch] | |
| jobs: | |
| make_sdist: | |
| name: Make SDist | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # Optional, use if you use setuptools_scm | |
| submodules: true # Optional, use if you have submodules | |
| - name: Install dependencies | |
| run: python -m pip install cython numpy pysam | |
| - name: Build SDist | |
| run: pipx run build --sdist | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: cibw-sdist | |
| path: dist/*.tar.gz | |
| build_wheels: | |
| name: Build wheels on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # macos-13 is an intel runner, macos-14 is apple silicon | |
| os: [ubuntu-latest] | |
| #, windows-latest, macos-13, macos-14] | |
| python-version: [ "3.11" ] # "3.7", "3.8", "3.9", "3.10", | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # - name: Build wheels | |
| # uses: pypa/[email protected] | |
| # # uses: pypa/[email protected] | |
| # # env: | |
| # # CIBW_SOME_OPTION: value | |
| # # ... | |
| # # with: | |
| # # package-dir: . | |
| # # output-dir: wheelhouse | |
| # # config-file: "{package}/pyproject.toml" | |
| - name: Install cibuildwheel | |
| run: python -m pip install cibuildwheel==2.22.0 | |
| - name: Build wheels | |
| run: python -m cibuildwheel --output-dir dist | |
| # to supply options, put them in 'env', like: | |
| env: | |
| #CIBW_BUILD_FRONTEND: "pip; args: --no-build-isolation" | |
| CIBW_BUILD_FRONTEND: "build; args: --no-isolation" | |
| CIBW_BEFORE_ALL: "yum install bzip2-devel xz-devel -y;" | |
| # we have to recompile pysam so that repairwheel can later find various libraries (libssl, libnghttp2, etc) | |
| #CIBW_BEFORE_ALL: "yum install bzip2-devel xz-devel openssl-devel openldap-devel krb5-devel libssh-devel libnghttp2-devel -y;" | |
| CIBW_BEFORE_BUILD: "python -m pip install setuptools cython numpy pysam --no-binary pysam" | |
| # skip building 32-bit wheels (i686) | |
| CIBW_ARCHS_LINUX: "auto64" | |
| # we could use 2_28 to download pysam's wheel instead of compiling it ; | |
| # HOWEVER THAT DIDN'T WORK BECAUSE PYSAM DEPENDS ON LIBSSL, LIBNGHTTP2, ETC, WHICH CANNOT BE FOUND | |
| # SO WE ARE BACK TO COMPILING PYSAM'S WHEEL (no-binary pysam) | |
| # CIBW_MANYLINUX_X86_64_IMAGE: "manylinux_2_28" | |
| ## skip building pypy and musllinux | |
| CIBW_SKIP: pp* *musllinux* | |
| #CIBW_REPAIR_WHEEL_COMMAND: 'auditwheel -v repair -w {dest_dir} {wheel}' | |
| #PIP_NO_CACHE_DIR: "false" | |
| #PIP_NO_BUILD_ISOLATION: "false" | |
| #PIP_NO_BINARY: "pysam" | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }} | |
| path: ./dist/*.whl |