Updated test_setup code

opain · Jul 26, 2024 · af5e30b · af5e30b
1 parent f6c1db1
commit af5e30b
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/pipeline/misc/dev/test_setup.Rmd b/pipeline/misc/dev/test_setup.Rmd
@@ -185,7 +185,10 @@ misc/dev/test_data/output/reference/target_checks/example_plink2/indiv_report-4_
 --configfile=misc/dev/test_data/config/config.yaml
 
 # Move output outside the container so it can be pushed to the repo
-mv misc/dev/test_data/output /scratch/prj/oliverpainfel/Software/MyGit/GenoPred/pipeline/misc/dev/test_data/output
+mkdir /scratch/prj/oliverpainfel/Software/MyGit/GenoPred/pipeline/misc/dev/test_data/output
+cp -r misc/dev/test_data/output/* /scratch/prj/oliverpainfel/Software/MyGit/GenoPred/pipeline/misc/dev/test_data/output/
+
+# 
 ```
 
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