Build and Push Docker and Singularity Images #4
Workflow file for this run
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| name: Build and Push Docker and Singularity Images | |
| on: | |
| release: | |
| types: [created] | |
| workflow_dispatch: | |
| inputs: | |
| tag: | |
| description: 'Tag for the release' | |
| required: true | |
| jobs: | |
| build-and-deploy: | |
| runs-on: ubuntu-latest | |
| env: | |
| DOCKER_HUB_USERNAME: ${{ secrets.DOCKER_HUB_USERNAME }} | |
| DOCKER_HUB_PASSWORD: ${{ secrets.DOCKER_HUB_PASSWORD }} | |
| SINGULARITY_LIBRARY_TOKEN: ${{ secrets.SINGULARITY_LIBRARY_TOKEN }} | |
| DOCKER_IMAGE_NAME: opaino/genopred_pipeline | |
| SINGULARITY_IMAGE_NAME: library://opain/genopred | |
| IMAGE_TAG: ${{ github.ref_name }} | |
| DOCKERFILE_PATH: pipeline/misc/docker/Dockerfile | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v1 | |
| - name: Login to Docker Hub | |
| run: echo "${{ secrets.DOCKER_HUB_PASSWORD }}" | docker login -u "${{ secrets.DOCKER_HUB_USERNAME }}" --password-stdin | |
| - name: Build and Push Docker Image | |
| run: | | |
| docker buildx build --platform linux/amd64 -f $DOCKERFILE_PATH -t $DOCKER_IMAGE_NAME:latest -t $DOCKER_IMAGE_NAME:${{ github.event.inputs.tag }} --push . | |
| - name: Install Singularity | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y singularity-container | |
| - name: Convert Docker Image to Singularity SIF | |
| run: | | |
| docker pull $DOCKER_IMAGE_NAME:latest | |
| singularity build ${GITHUB_WORKSPACE}/image.sif docker-daemon://${DOCKER_IMAGE_NAME}:latest | |
| - name: Login to Singularity Library | |
| run: echo "${{ secrets.SINGULARITY_LIBRARY_TOKEN }}" | singularity remote login --tokenfile - | |
| - name: Push Singularity Image to Singularity Library | |
| run: | | |
| singularity push ${GITHUB_WORKSPACE}/image.sif $SINGULARITY_IMAGE_NAME:latest | |
| singularity build ${GITHUB_WORKSPACE}/image_${{ github.event.inputs.tag }}.sif docker-daemon://${DOCKER_IMAGE_NAME}:${{ github.event.inputs.tag }} | |
| singularity push ${GITHUB_WORKSPACE}/image_${{ github.event.inputs.tag }}.sif $SINGULARITY_IMAGE_NAME:${{ github.event.inputs.tag }} | |