Merge pull request #40 from omics-datascience/celery-integration

Celery integration

src/api_service/mrna_service.py

@@ -1,6 +1,6 @@
 import logging
 from json.decoder import JSONDecodeError
-from typing import Any, Dict, Optional, Literal
+from typing import Any, Dict, Optional, Literal, Union
 import requests
 from django.conf import settings
 from django.http import QueryDict
@@ -35,7 +35,7 @@ def __get_service_content(
             url_prefix: str,
             method: Literal['get', 'post'],
             append_slash: bool
-    ) -> Optional[Any]:
+    ) -> Optional[Union[Dict, str]]:
         """
         Generic function to make a request to a Modulector/BioAPI service
         @param service_name: Modulector/BioAPI service to consume
@@ -66,9 +66,8 @@ def __get_service_content(
                 logging.warning(f'{method.upper()} to {url} returned status_code {data.status_code} and '
                                 f'message: {data.content}')
                 return None
-        
+
             content_type = data.headers.get('Content-Type', '')
-            print(content_type)
             if 'application/json' in content_type:
                 return data.json()
             elif 'text/plain' in content_type or 'text/html' in content_type:

src/molecules_details/urls.py

@@ -15,6 +15,6 @@
     path('gene-ontology-term-terms', views.GeneOntologyTermsOfTerm.as_view(), name='gene_ontology_term_terms'),
     path('actionable-cancer-genes', views.ActionableAndCancerGenes.as_view(), name='actionable_cancer_genes'),
     path('drugs-pharmgkb', views.DrugsPharmGKB.as_view(), name='drugs_pharmgkb'),
-    path('predicted-functiona-associations-network', views.PredictedFunctionalAssociationsNetwork.as_view(), name='predicted_functiona_associations_network'),
+    path('predicted-functional-associations-network', views.PredictedFunctionalAssociationsNetwork.as_view(), name='predicted_functional_associations_network'),
     path('drugs-regulating-gene', views.DrugsRegulatingGene.as_view(), name='drugs_regulating_gene')
 ]

src/molecules_details/views.py

@@ -342,8 +342,8 @@ class PredictedFunctionalAssociationsNetwork(APIView):
     """
     Gets a list of genes and relations related to a gene.
     Examples:
-    http://localhost:8000/molecules/predicted-functiona-associations-network?gene=MX2&score=996
-    http://localhost:8000/molecules/predicted-functiona-associations-network?gene=BRCA1&score=995
+    http://localhost:8000/molecules/predicted-functional-associations-network?gene=MX2&score=996
+    http://localhost:8000/molecules/predicted-functional-associations-network?gene=BRCA1&score=995
     """
 
     permission_classes = [permissions.IsAuthenticated]
@@ -401,4 +401,3 @@ def get(request: HttpRequest):
         return Response({
             'data': data
         })
-