Fix/cancel bio api #77
Workflow file for this run
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| name: PR pipeline to verify tests and code rules | |
| on: [pull_request] | |
| jobs: | |
| Python-tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| python-version: [3.8] | |
| services: | |
| redis: | |
| image: redis | |
| options: >- | |
| --health-cmd "redis-cli ping" | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| - 6379:6379 | |
| postgres: | |
| image: postgres:13 | |
| env: | |
| POSTGRES_PASSWORD: multiomics | |
| POSTGRES_USER: multiomics | |
| POSTGRES_DB: multiomics | |
| POSTGRES_HOST_AUTH_METHOD: trust | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| - 5432:5432 | |
| mongo: | |
| image: "mongo:4.2" | |
| env: | |
| MONGO_INITDB_ROOT_USERNAME: multiomics | |
| MONGO_INITDB_ROOT_PASSWORD: multiomics | |
| MONGO_INITDB_DATABASE: multiomics | |
| options: >- | |
| --health-cmd "/bin/bash -c 'mongo --norc --quiet --host=localhost:27017 --eval \"db.getMongo()\"'" | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| - 27017:27017 | |
| env: | |
| REDIS_HOST: localhost | |
| REDIS_PORT: 6379 | |
| MONGO_HOST: localhost | |
| MONGO_DB: multiomics | |
| MONGO_USERNAME: multiomics | |
| MONGO_PASSWORD: multiomics | |
| POSTGRES_USERNAME: multiomics | |
| POSTGRES_PASSWORD: multiomics | |
| POSTGRES_HOST: localhost | |
| POSTGRES_DB: multiomics | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Create virtual environment | |
| run: | | |
| pip install virtualenv | |
| virtualenv venv | |
| - name: Install Dependencies | |
| run: | | |
| . venv/bin/activate | |
| pip install -r config/requirements.txt | |
| - name: Run Tests | |
| run: | | |
| . venv/bin/activate | |
| python src/manage.py test src --settings=multiomics_intermediate.settings_ci | |
| Node-checks: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| node-version: [16.x] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Use Node.js ${{ matrix.node-version }} | |
| uses: actions/setup-node@v1 | |
| with: | |
| node-version: ${{ matrix.node-version }} | |
| - name: NPM install | |
| run: npm --prefix src/frontend/static/frontend i | |
| - name: NPM linter checks | |
| run: npm --prefix src/frontend/static/frontend run check-all |