Merge pull request #19 from sbesson/package_renaming

Package renaming
ome · Jul 4, 2019 · ad50292 · ad50292
2 parents c9f8e01 + 7e06a11
commit ad50292
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Showing 9 changed files with 19 additions and 13 deletions.
diff --git a/CHANGES.rst b/CHANGES.rst
@@ -1,6 +1,12 @@
 CHANGES
 =======
 
+0.4.0
+-----
+
+* Rename imports to omero_metadata.{cli,populate}
+* Handle change in table closing semantics
+
 0.3.1
 -----
 

diff --git a/setup.py b/setup.py
@@ -91,12 +91,12 @@ def read(fname):
     return open(os.path.join(os.path.dirname(__file__), fname)).read()
 
 
-version = '0.3.2.dev1'
+version = '0.4.0'
 url = "https://github.com/ome/omero-metadata/"
 
 setup(
     version=version,
-    packages=['', 'omero.plugins'],
+    packages=['', 'omero_metadata', 'omero.plugins'],
     package_dir={"": "src"},
     name='omero-metadata',
     description="Metadata plugin for use in the OMERO CLI.",

diff --git a/src/omero/plugins/metadata.py b/src/omero/plugins/metadata.py
@@ -10,7 +10,7 @@
 
 import sys
 from omero.cli import CLI
-from omero_cli_metadata import MetadataControl, HELP
+from omero_metadata.cli import MetadataControl, HELP
 try:
     register("metadata", MetadataControl, HELP)
 except NameError:

diff --git a/src/omero_metadata/__init__.py b/src/omero_metadata/__init__.py
diff --git a/src/omero_cli_metadata.py → src/omero_metadata/cli.py b/src/omero_cli_metadata.py → src/omero_metadata/cli.py
@@ -19,7 +19,7 @@
 from omero.cli import ProxyStringType
 from omero.constants import namespaces
 from omero.gateway import BlitzGateway
-import populate_metadata
+import omero_metadata.populate
 from omero.util import populate_roi, pydict_text_io
 from omero.util.metadata_utils import NSBULKANNOTATIONSCONFIG
 from omero.util.metadata_utils import NSBULKANNOTATIONSRAW
@@ -129,9 +129,9 @@ def __str__(self):
 class MetadataControl(BaseControl):
 
     POPULATE_CONTEXTS = (
-        ("csv", populate_metadata.ParsingContext),
-        ("bulkmap", populate_metadata.BulkToMapAnnotationContext),
-        ("deletemap", populate_metadata.DeleteMapAnnotationContext),
+        ("csv", omero_metadata.populate.ParsingContext),
+        ("bulkmap", omero_metadata.populate.BulkToMapAnnotationContext),
+        ("deletemap", omero_metadata.populate.DeleteMapAnnotationContext),
     )
 
     def _configure(self, parser):
@@ -446,9 +446,9 @@ def populate(self, args):
         client, conn = self._clientconn(args)
         # TODO: Configure logging properly
         if args.report:
-            populate_metadata.log.setLevel(logging.DEBUG)
+            omero_metadata.populate.log.setLevel(logging.DEBUG)
         else:
-            populate_metadata.log.setLevel(logging.INFO)
+            omero_metadata.populate.log.setLevel(logging.INFO)
 
         context_class = dict(self.POPULATE_CONTEXTS)[args.context]
 

diff --git a/src/populate_metadata.py → src/omero_metadata/populate.py b/src/populate_metadata.py → src/omero_metadata/populate.py
@@ -57,7 +57,7 @@
 from omero.util.populate_roi import ThreadPool
 
 
-log = logging.getLogger("omero.util.populate_metadata")
+log = logging.getLogger("omero_metadata.populate")
 
 
 def usage(error):

diff --git a/test/integration/clitest/test_metadata.py b/test/integration/clitest/test_metadata.py
@@ -25,7 +25,7 @@
 import omero.gateway
 from omero.constants.namespaces import NSBULKANNOTATIONS, NSMEASUREMENT
 from omero.gateway import BlitzGateway
-from omero_cli_metadata import Metadata, MetadataControl
+from omero_metadata.cli import Metadata, MetadataControl
 from omero.rtypes import rdouble, unwrap
 from omero.testlib.cli import CLITest
 from omero.model.enums import UnitsLength

diff --git a/test/integration/metadata/test_populate.py b/test/integration/metadata/test_populate.py
@@ -44,7 +44,7 @@
 from omero.rtypes import rdouble, rlist, rstring, unwrap
 from omero.sys import ParametersI
 
-from populate_metadata import (
+from omero_metadata.populate import (
     get_config,
     ParsingContext,
     BulkToMapAnnotationContext,

diff --git a/test/integration/tablestest/test_populate_metadata.py b/test/integration/tablestest/test_populate_metadata.py
@@ -29,7 +29,7 @@
 
 from omero.model import PlateI, WellI, WellSampleI, OriginalFileI
 from omero.rtypes import rint, rstring, unwrap
-from populate_metadata import ParsingContext
+from omero_metadata.populate import ParsingContext
 from omero.constants.namespaces import NSBULKANNOTATIONS