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oganm · Aug 11, 2024 · 71d9ea0 · 71d9ea0
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,13 +1,13 @@
 Package: geneSynonym
 Type: Package
 Title: Quick Access to Gene Synonym Information
-Version: 1.7.24.8.4
+Version: 1.7.24.8.11
 Depends: R(>= 3.1)
 Imports: 
     utils (>= 3.4.0),
     magrittr (>= 1.5)
 Suggests: testthat
-Date: 2024-08-04
+Date: 2024-08-11
 Authors@R: person("Ogan", "Mancarci", email = "[email protected]", role = c("aut", "cre"))
 BugReports: https://github.com/oganm/geneSynonym/issues
 URL: https://github.com/oganm/geneSynonym

diff --git a/data-raw/syno10090 b/data-raw/syno10090
@@ -1095,7 +1095,7 @@
 13123|Cyp7b1|D3Ertd552e|hct-1
 13124|Cyp8b1
 13130|da
-13131|Dab1|C630028C02Rik|scm|scr|scrambler|yot
+13131|Dab1|C630028C02Rik|mDab1|scm|scr|scrambler|yot
 13132|Dab2|5730435J12Rik|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96
 13134|Dach1|Dac|Dach
 13135|Dad1
@@ -2820,7 +2820,7 @@
 16434|Itpa|2010016I08Rik|ITPase|Itp|NTPase
 16438|Itpr1|D6Pas2|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo
 16439|Itpr2|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2
-16440|Itpr3|IP3R 3|Ip3r3|Itpr-3|tf
+16440|Itpr3|IP3R 3|IP3R-3|Ip3r3|Itpr-3|tf
 16443|Itsn1|Ehsh1|Ese1|Itsn|Sh3p17
 16447|Ivl|1110019C06Rik
 16449|Jag1|ABE2|Gena228|Gsfabe2|Htu|Ozz|Ser-1
@@ -3586,7 +3586,7 @@
 17878|Myf6|MRF4|bHLHc4|herculin
 17879|Myh1|A530084A17Rik|IId|IId/x|MHC-2X/D|MHC2X/D|MYHC-IIX|MdMs|MyHC-IId/x|MyHC-IIx/d|Myhs-f|Myhs-f2|Myhsf2
 17880|Myh11|SM1|SM2|smMHC
-17882|Myh2|MHC2A|MyHC-IIa|Myh2a|Myhs-f|Myhs-f1|Myhsf1
+17882|Myh2|MHC2A|MyHC-2a|MyHC-IIa|Myh2a|Myhs-f|Myhs-f1|Myhsf1
 17883|Myh3|MyHC-emb|Myhs-e|Myhse
 17884|Myh4|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf
 17885|Myh8|4832426G23Rik|MHCp|MyHC-pn|Myhs-p|Myhsp
@@ -16121,7 +16121,7 @@
 71941|Cars2|2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS
 71943|Tom1l1|2310045L10Rik|Srcasm
 71946|Endod1|2210414F18Rik|2310067E08Rik
-71947|Tmem94|2310067B10Rik|Kiaa0195|mKIAA0195
+71947|Tmem94|2310067B10Rik|ERMA|Kiaa0195|mKIAA0195
 71949|Cers5|2310081H14Rik|Lass5|Trh4
 71950|Nanog|2410002E02Rik|ENK|Stm1|ecat4
 71951|Gpc2|2410016G05Rik
@@ -16578,7 +16578,7 @@
 72773|2810449G22Rik
 72774|Neil1|2810450N13Rik|NEH1|Nei1
 72775|Fance|2810451D06Rik
-72776|Sass6|2810453L12Rik
+72776|Sass6|2810453L12Rik|SAS-6
 72777|2810455B08Rik
 72778|Dnajc22|2810451A06Rik
 72780|Rspo3|2810459H04Rik|Cristin1|Thsd2
@@ -17478,7 +17478,7 @@
 74223|1700023D08Rik
 74227|1700016A09Rik
 74228|1700016C19Rik
-74229|Paqr8|1700019B16Rik|3110001D06Rik
+74229|Paqr8|1700019B16Rik|3110001D06Rik|mPR beta
 74230|Liat1|1700016K19Rik
 74231|1700017H01Rik
 74234|N4bp2os|1700022K14Rik
@@ -112286,3 +112286,4 @@
 135227172|Chapir
 135575218|Zfp7-commd5
 136407943|Gm29348|Maenli
+136856708|LOC136856708
diff --git a/data-raw/syno10116 b/data-raw/syno10116
@@ -4036,7 +4036,7 @@
 155183|Skap2|Scap2|Scap55r
 155192|Abcg8
 155205|Slc36a1|Lyaat1
-155268|Cldn16|Pcln1
+155268|Cldn16|PLCN-1|Pcln1
 155423|Anxa7
 155430|Hey2|Herp1
 155437|Hey1|Herp2
@@ -4995,7 +4995,7 @@
 286973|Elavl2|Elav2|Hub
 286974|Chst15|GalNAc4S6ST|Galnac4s-6st
 286975|Skap1|Scap1|Skap55
-286976|Gcnt3|beta-16-N-acetylglucosaminyltransferase|dI/C2/C4GnT
+286976|Gcnt3|C2GnT-M|dI/C2/C4GnT|dIGnT
 286978|Tmsb15b2|Tmsbl1
 286979|Zfp455|Kzf-2|Kzf2
 286981|Vom2r32
@@ -13413,7 +13413,7 @@
 360811|Naa25|LRRGT00164|Mdm20|RGD1305685
 360814|Rasal1
 360815|Ddx54|RGD1562539
-360816|Sdsl|Sdhl
+360816|Sdsl|Sdhl|TDH
 360817|Med13l|Thrap2
 360818|Fbxo21
 360819|Suds3|RGD1305986
@@ -18437,7 +18437,7 @@
 499313|Zbtb3|RGD1561140
 499314|Tut1
 499317|Tmem258|RGD1560328
-499319|Ms4a13-ps1|Ms4a13|RGD1564175
+499319|Ms4a13|Ms4a13-ps1|RGD1564175
 499322|Fam111a|RGD1560913
 499323|Cct7-ps1|Cct7-1p|RGD1562884
 499328|Rfk
@@ -19746,7 +19746,7 @@
 548104|Pcdhb17
 548105|Pcdhb18
 548106|Pcdhb19
-548326|Fcmr|Faim3|IgM FcR|Toso
+548326|Fcmr|FAIM3g|Faim3|IgM FcR|Toso
 553106|Ncald
 553129|Pcdhga1
 554172|Pxdn|Perc64|Vpo1
@@ -20404,7 +20404,7 @@
 680906|Fam169b
 680908|Nip7-ps2
 680911|Kics2-ps1
-680912|Kcnu1
+680912|Kcnu1|KCa5.1|rSlo3
 680913|C19h16orf78
 680915|Mbd4
 680920|Ncr2l1
@@ -28038,7 +28038,7 @@
 103690976|Ube2n-ps4
 103690977|Hnrnpml1
 103690986|LOC103690986
-103690996|Rpl35al1
+103690996|Rpl35a-ps8|Rpl35al1
 103691003|LOC103691003
 103691005|Zfp51
 103691020|Zscan4l-ps1|RGD1561351
@@ -28738,7 +28738,7 @@
 103694419|Rpl39l4
 103694421|LOC103694421
 103694425|LOC103694425
-103694426|Cox5bl1
+103694426|Cox5b-ps2|Cox5bl1|Cox5bl1-ps2
 103694427|LOC103694427
 103694428|LOC103694428
 103694446|LOC103694446
@@ -34108,7 +34108,7 @@
 120096940|LOC120096940
 120096941|LOC120096941
 120096942|LOC120096942
-120096943|Rcor2l2
+120096943|Rcor2-ps1|Rcor2l2
 120096947|LOC120096947
 120096948|LOC120096948
 120096949|LOC120096949
@@ -45630,7 +45630,7 @@
 134484929|LOC134484929
 134484930|LOC134484930
 134484931|LOC134484931
-134484932|LOC134484932
+134484932|Fxr1-ps1
 134484933|LOC134484933
 134484934|LOC134484934
 134484935|LOC134484935

diff --git a/data-raw/syno7955 b/data-raw/syno7955
@@ -18183,7 +18183,6 @@
 570478|cmpk2|si:ch211-276e8.3
 570479|ska3|fc23d11|si:rp71-68n21.13|wu:fc23d11
 570481|dtx4a|dtx1|si:ch211-119e14.2
-570486|fc18a08
 570488|si:ch211-191a24.2
 570491|npas3
 570492|klhl43|si:ch1073-201c17.1
@@ -42110,7 +42109,6 @@
 110437748|LOC110437748
 110437749|LOC110437749
 110437750|dicp1.2
-110437751|fam214b
 110437752|tcerg1l|si:ch211-177d9.1
 110437754|prlh2|C-RFa|crfa|si:dkey-189e1.3
 110437755|LOC110437755

diff --git a/data-raw/syno8364 b/data-raw/syno8364
@@ -775,7 +775,6 @@
 444887|st8sia1|Xlgd3|siat8|siat8a|st8siaI|st8sial
 444888|fut11
 445258|psmb8|d6s216|d6s216e|lmp7|ring10
-445259|psmb9|LMP2|MHC-linked|ring12
 445260|rhcg|C15ORF6|pdrc2|rhgk|slc42a3
 446220|tacc3|eric1|maskin|xmaskin
 447948|dctn1|Dynactin-1|dap-150|dp-150|glued|hmn7b|p135
@@ -1013,7 +1012,7 @@
 448187|exoc3|sec6l1
 448188|slc5a6
 448189|rad51d|rad51l3
-448190|sub1
+448190|sub1|sub1.S
 448191|wwc2|bomb
 448192|LOC448192
 448193|cryz
@@ -2343,7 +2342,6 @@
 496771|hcls1|CTTN-LIKE|cttn|cttnl|hs1|lckBP1|lckbp
 496772|cnep1r1|tmem188
 496773|art5
-496774|prodh2
 496775|atraid|apr-3|apr3|c2orf28
 496776|cst7
 496777|pomc|aMSH|acth|alpha-MSH|clip|lph|msh|npp|poc|pomc-a|pomc-b
@@ -5022,7 +5020,6 @@
 734126|igkv3-20
 734127|igl|igl@
 734128|XB5939688
-734129|nectin4|lnir|nectin-4|prr4|pvrl4
 734130|fcrl3|fcrh3|fcrl3-a|fcrl3-b|ifgp3|irta3|spap2|xfl1.2
 734131|hhla2
 734132|itih2
@@ -6297,7 +6294,6 @@
 100038077|nkx2-2|XeNK-2|Xnkx2.2|nkx2.2|nkx2b
 100038078|rcor2|XCoREST
 100038079|e2f4|e2f-4
-100038080|foxo6|foxo3|foxo3l|xFox06
 100038081|tcf20|ar1|spbp
 100038082|fzd3|Fz-3|Xfz3|frizzled-3|frizzled3|frz-3|frz3|fz3|hfz3
 100038083|prrt1|ng5|syndig4
@@ -8260,7 +8256,6 @@
 100145138|hat1
 100145139|h2ac12|hist1h2ah
 100145140|znf3
-100145141|tceanc2
 100145142|ocm4.5|ocm|ocm1|oncm|parvalbumin
 100145143|skida1|c10orf140|xDAWG
 100145144|XB5901661
@@ -9009,7 +9004,6 @@
 100158607|tmem223
 100158608|znf684
 100158609|rspo1
-100158611|ammecr1l
 100158612|gcc2
 100158613|anks4b
 100158614|rgs20|rgsz1|zgap1
@@ -10479,7 +10473,7 @@
 100485327|LOC100485327
 100485328|hey2|gridlock|hesr2
 100485330|cnnm1
-100485335|LOC100485335
+100485335|pax6l|pax6.2
 100485337|rgl3|rgl1
 100485338|trpc4|htrp4|trp4
 100485340|LOC100485340
@@ -13079,7 +13073,7 @@
 100490151|dennd4a
 100490154|ide
 100490155|gys1|gsy|gys
-100490156|foxo6
+100490156|foxo6|foxo3|foxo3l|xFox06
 100490157|LOC100490157
 100490162|otp
 100490164|XB5836481
@@ -16411,7 +16405,7 @@
 100496396|hspa2
 100496398|LOC100496398|gabrq
 100496400|LOC100496400
-100496402|LOC100496402
+100496402|rnf213.2
 100496403|znf205
 100496405|LOC100496405
 100496408|mstn.1|gdf-8|gdf8|myostatin
@@ -18525,7 +18519,7 @@
 101731948|dan4l|gene19
 101731949|LOC101731949
 101731953|LOC101731953
-101731954|psmb9|LMP2
+101731954|psmb9|LMP2|MHC-linked|ring12
 101731956|LOC101731956
 101731958|LOC101731958
 101731959|LOC101731959
@@ -19235,7 +19229,7 @@
 101733857|or16l1
 101733858|LOC101733858
 101733862|LOC101733862
-101733863|hoxa11
+101733863|hoxa11|Xhoxa11
 101733866|LOC101733866
 101733867|LOC101733867
 101733871|LOC101733871
@@ -19328,7 +19322,7 @@
 101734075|LOC101734075
 101734078|LOC101734078
 101734081|LOC101734081
-101734085|nectin4
+101734085|nectin4|lnir|nectin-4|prr4|pvrl4
 101734086|elp5
 101734087|LOC101734087
 101734088|LOC101734088

diff --git a/data-raw/syno9544 b/data-raw/syno9544
@@ -10410,7 +10410,7 @@
 706962|SYT2
 706964|VDR
 706966|CAPN13
-706967|LOC706967|FAHD2A|FAHD2B
+706967|FAHD2A|FAHD2B
 706970|LOC706970
 706971|LOC706971
 706972|SREBF1

diff --git a/data-raw/syno9606 b/data-raw/syno9606
@@ -623,7 +623,7 @@
 764|CA5AP1|CA5P
 765|CA6|CA-VI|GUSTIN
 766|CA7|CA-VII|CAVII
-767|CA8|CA-RP|CA-VIII|CALS|CAMRQ3|CARP
+767|CA8|CA-RP|CA-VIII|CALS|CAMRQ3|CARP|SCAR34
 768|CA9|CAIX|MN
 770|CA11|CA-RP|CA-RP II|CA-XI|CARP-2|CARPX1
 771|CA12|CA-XII|CAXII|HsT18816|T18816
@@ -767,7 +767,7 @@
 937|CD24P3|CD24L3
 938|CD24P4|CD24L4
 939|CD27|S152|S152. LPFS2|T14|TNFRSF7|Tp55
-940|CD28|Tp44
+940|CD28|IMD123|Tp44
 941|CD80|B7|B7-1|B7.1|BB1|CD28LG|CD28LG1|LAB7
 942|CD86|B7-2|B7.2|B70|CD28LG2|LAB72
 943|TNFRSF8|CD30|D1S166E|Ki-1
@@ -2457,7 +2457,7 @@
 3024|H1-1|H1.1|H1A|H1F1|HIST1|HIST1H1A
 3026|HABP2|FSAP|HABP|HGFAL|NMTC5|PHBP
 3028|HSD17B10|17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|HSD10MD|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1
-3029|HAGH|GLO2|GLX2|GLXII|HAGH1
+3029|HAGH|GLO2|GLO2D|GLX2|GLXII|HAGH1
 3030|HADHA|ECHA|GBP|HADH|LCEH|LCHAD|MTPA|TP-ALPHA
 3031|HADHAP1|HADHAP
 3032|HADHB|ECHB|MSTP029|MTPB|MTPD|MTPD2|TP-BETA
@@ -2998,7 +2998,7 @@
 3707|ITPKB|IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37
 3708|ITPR1|ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29
 3709|ITPR2|ANHD|CFAP48|INSP3R2|IP3R2
-3710|ITPR3|CMT1J|IP3R|IP3R3
+3710|ITPR3|CMT1J|IP3R|IP3R-3|IP3R3
 3712|IVD|ACAD2|IVDH
 3713|IVL
 3714|JAG2|HJ2|LGMDR27|SER2
@@ -7645,7 +7645,7 @@
 9840|TESPA1|HSPC257|ITPRID3|KIAA0748
 9841|ZBTB24|BIF1|ICF2|PATZ2|ZNF450
 9842|PLEKHM1|AP162|B2|OPTA3|OPTB6
-9843|HEPH|CPL
+9843|HEPH|CPL|Hp
 9844|ELMO1|CED-12|CED12|ELMO-1
 9846|GAB2
 9847|C2CD5|CDP138|KIAA0528
@@ -8716,7 +8716,7 @@
 11112|HIBADH|NS5ATP1
 11113|CIT|CITK|CRIK|MCPH17|STK21
 11116|CEP43|FGFR1OP|FOP
-11117|EMILIN1|EMI|EMILIN|HMN10|HMND10|gp115
+11117|EMILIN1|ATBFS|EMI|EMILIN|HMN10|HMND10|gp115
 11118|BTN3A2|BT3.2|BTF4|BTN3.2|CD277
 11119|BTN3A1|BT3.1|BTF5|BTN3.1|CD277
 11120|BTN2A1|BK14H9.1|BT2.1|BTF1|BTN2.1|DJ3E1.1
@@ -9498,7 +9498,7 @@
 23564|DDAH2|DDAH|DDAHII|G6a|HEL-S-277|NG30
 23566|LPAR3|EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3
 23567|ZNF346|JAZ|Zfp346
-23568|ARL2BP|BART|BART1|RP66
+23568|ARL2BP|BART|BART1|RP66|RP82
 23569|PADI4|PAD|PAD4|PADI5|PDI4|PDI5
 23574|PRG1
 23576|DDAH1|DDAH|DDAH-1|DDAHI|HEL-S-16
@@ -16177,7 +16177,7 @@
 84888|SPPL2A|IMD86|IMP3|PSL2
 84889|SLC7A3|ATRC3|CAT-3|CAT3
 84890|ADO|C10orf22
-84891|ZSCAN10|ZFP206|ZNF206
+84891|ZSCAN10|OFNS|ZFP206|ZNF206
 84892|POMGNT2|AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8
 84893|FBH1|FBXO18|Fbx18|hFBH1
 84894|LINGO1|LERN1|LRRN6A|MRT64|UNQ201
@@ -21152,7 +21152,7 @@
 286077|FAM83H|AI3|AI3A
 286083|LOC286083
 286094|LINC01591
-286097|MICU3|EFHA2
+286097|MICU3|EFHA2|hMICU3
 286101|ZNF252P|ZNF252
 286102|TMED10P1|S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1
 286103|ZNF252P-AS1|C8orf77

diff --git a/data-raw/syno9615 b/data-raw/syno9615
@@ -21093,7 +21093,7 @@
 102151126|LOC102151126
 102151128|LOC102151128
 102151129|LOC102151129
-102151131|LOC102151131|GNRH2
+102151131|GNRH2P
 102151133|LOC102151133
 102151134|LOC102151134
 102151135|LOC102151135