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Add mass spectrometry analysis terms #1747

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Nov 30, 2023
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Add mass spectrometry analysis terms #1747

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Add mass spectrometry analysis terms
sebastianduesing Nov 9, 2023
8f85c18
Merge branch 'master' into spectrometry_terms_1684
jamesaoverton Nov 30, 2023
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147 changes: 147 additions & 0 deletions src/ontology/modules/data-transformations.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -22,6 +22,12 @@



<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111"/>



<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
Expand All @@ -40,6 +46,12 @@



<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>



<!-- http://purl.obolibrary.org/obo/IAO_0000233 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000233"/>
Expand Down Expand Up @@ -69,6 +81,12 @@



<!-- http://purl.obolibrary.org/obo/OBI_0000312 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000312"/>



<!--
///////////////////////////////////////////////////////////////////////////////////////
//
Expand All @@ -80,6 +98,24 @@



<!-- http://purl.obolibrary.org/obo/CHMO_0000701 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHMO_0000701"/>



<!-- http://purl.obolibrary.org/obo/IAO_0000027 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>



<!-- http://purl.obolibrary.org/obo/OBI_0003097 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003097"/>



<!-- http://purl.obolibrary.org/obo/OBI_0003327 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003327"/>
Expand Down Expand Up @@ -153,9 +189,120 @@



<!-- http://purl.obolibrary.org/obo/OBI_0003540 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003540"/>



<!-- http://purl.obolibrary.org/obo/OBI_0003647 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003647">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0200085"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003540"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000111>tandem mass spectrometry analysis</obo:IAO_0000111>
<obo:IAO_0000117>Sebastian Duesing</obo:IAO_0000117>
<obo:IAO_0000119>A mass spectrometry analysis in which the data being analyzed is the result of a tandem mass spectrometry assay.</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1684</obo:IAO_0000233>
<rdfs:label>tandem mass spectrometry analysis</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBI_0003648 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003648">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0200085"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/OBI_0003097"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000111>liquid chromatography mass spectrometry analysis</obo:IAO_0000111>
<obo:IAO_0000117>Sebastian Duesing</obo:IAO_0000117>
<obo:IAO_0000119>A mass spectrometry analysis in which the data being analyzed is the result of a liquid chromatography mass spectrometry assay.</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1684</obo:IAO_0000233>
<rdfs:label>liquid chromatrography mass spectrometry analysis</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBI_0003649 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003649">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/OBI_0200085"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000293"/>
<owl:someValuesFrom>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000027"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000312"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHMO_0000701"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:someValuesFrom>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000111>liquid chromatography tandem mass spectrometry analysis</obo:IAO_0000111>
<obo:IAO_0000117>Sebastian Duesing</obo:IAO_0000117>
<obo:IAO_0000119>A mass spectrometry analysis in which the data being analyzed is the result of a liquid chromatography tandem mass spectrometry assay.</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1684</obo:IAO_0000233>
<rdfs:label>liquid chromatography-tandem mass spectrometry analysis</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBI_0200000 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200000"/>



<!-- http://purl.obolibrary.org/obo/OBI_0200085 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200085"/>
</rdf:RDF>


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3 changes: 3 additions & 0 deletions src/ontology/templates/data-transformations.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -2,3 +2,6 @@ ontology ID label editor preferred term has curation status alternative term def
ID A rdfs:label A editor preferred term AI has curation status A alternative term SPLIT=| A definition SPLIT=| A definition source SPLIT=| A example of usage SPLIT=| A term editor SPLIT=| A editor note SPLIT=| A curator note SPLIT=| A term tracker item CLASS_TYPE C % C has_specified_input some % C has_specified_output some % C achieves_planned_objective some % C %
OBI:0003355 image data set analysis The process of deriving a data item from an image data set using computer algorithms. The produced data item can be an image data set, data measurement, or any other data item. https://orcid.org/0000-0001-9676-7377 ""Alexander D. Bartnik""|https://orcid.org/0000-0001-9990-8331 ""Alexander D. Diehl""|https://orcid.org/0000-0001-9625-1899 ""William D. Duncan""|https://orcid.org/0000-0002-2104-0568 ""Lucas M. Serra""|https://orcid.org/0000-0002-7245-3450 ""Lauren M. Wishnie""|https://orcid.org/0000-0002-9821-4132 ""Mackenzie T. Smith"" https://github.com/obi-ontology/obi/issues/1481 subclass data transformation image data set
OBI:0003356 raw magnetic resonance image data set reconstruction A process that transforms raw magnetic resonance image data from an NMR/MRI machine into a reconstructed magnetic resonance image data set. A Fourier transform of raw ""k-space"" data produced into an image data set that represents the anatomical structure of the tissue examined. https://orcid.org/0000-0001-9676-7377 ""Alexander D. Bartnik""|https://orcid.org/0000-0001-9990-8331 ""Alexander D. Diehl""|https://orcid.org/0000-0001-9625-1899 ""William D. Duncan""|https://orcid.org/0000-0002-2104-0568 ""Lucas M. Serra""|https://orcid.org/0000-0002-7245-3450 ""Lauren M. Wishnie""|https://orcid.org/0000-0002-9821-4132 ""Mackenzie T. Smith"" https://github.com/obi-ontology/obi/issues/1481 equivalent image data set analysis raw magnetic resonance image data set reconstructed magnetic resonance image data set
OBI:0003647 tandem mass spectrometry analysis tandem mass spectrometry analysis A mass spectrometry analysis in which the data being analyzed is the result of a tandem mass spectrometry assay. Sebastian Duesing https://github.com/obi-ontology/obi/issues/1684 equivalent mass spectrometry analysis ('data item' and is_specified_output_of some 'tandem mass spectrometry assay')
OBI:0003648 liquid chromatrography mass spectrometry analysis liquid chromatography mass spectrometry analysis A mass spectrometry analysis in which the data being analyzed is the result of a liquid chromatography mass spectrometry assay. Sebastian Duesing https://github.com/obi-ontology/obi/issues/1684 equivalent mass spectrometry analysis ('data item' and is_specified_output_of some 'liquid chromatography mass spectrometry assay')
OBI:0003649 liquid chromatography-tandem mass spectrometry analysis liquid chromatography tandem mass spectrometry analysis A mass spectrometry analysis in which the data being analyzed is the result of a liquid chromatography tandem mass spectrometry assay. Sebastian Duesing https://github.com/obi-ontology/obi/issues/1684 equivalent mass spectrometry analysis ('data item' and is_specified_output_of some 'liquid chromatography-tandem mass spectrometry')
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