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Merge pull request #1776 from cmungall/patch-4
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Add info that pipe is internal separator to biobank-specimens.tsv
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jamesaoverton authored Mar 21, 2024
2 parents e2d5435 + 670c46b commit 8cf5481
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3 changes: 2 additions & 1 deletion src/ontology/modules/biobank-specimens.owl
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</owl:equivalentClass>
<obo:IAO_0000115>A specimen that is collected with a suctioning tube from the nasal cavity.</obo:IAO_0000115>
<obo:IAO_0000117>Asiyah Yu Lin ORCID:0000-0003-2620-0345</obo:IAO_0000117>
<obo:IAO_0000118>nasal wash specimen|nasopharyngeal aspirate</obo:IAO_0000118>
<obo:IAO_0000118>nasal wash specimen</obo:IAO_0000118>
<obo:IAO_0000118>nasopharyngeal aspirate</obo:IAO_0000118>
<obo:IAO_0000119>Asiyah Yu Lin ORCID:0000-0003-2620-0345</obo:IAO_0000119>
<rdfs:label>nasal aspirate specimen</rdfs:label>
</owl:Class>
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2 changes: 1 addition & 1 deletion src/ontology/templates/biobank-specimens.tsv
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ontology ID label editor preferred term has curation status alternative term definition definition source example of usage term editor editor note curator note ontology term requester term tracker item logical type specimen collection process gross anatomical part collection process input URI
ID A rdfs:label A editor preferred term AI has curation status A alternative term A definition A definition source SPLIT=| A example of usage SPLIT=| A term editor SPLIT=| A editor note SPLIT=| A curator note SPLIT=| A ontology term requester A term tracker item CLASS_TYPE C specimen and (is_specified_output_of some %) C specimen and (is_specified_output_of some 'specimen collection process') and ('derives from' some %) C specimen and (is_specified_output_of some ('specimen collection process' and has_specified_input some %))
ID A rdfs:label A editor preferred term AI has curation status A alternative term SPLIT=| A definition A definition source SPLIT=| A example of usage SPLIT=| A term editor SPLIT=| A editor note SPLIT=| A curator note SPLIT=| A ontology term requester A term tracker item CLASS_TYPE C specimen and (is_specified_output_of some %) C specimen and (is_specified_output_of some 'specimen collection process') and ('derives from' some %) C specimen and (is_specified_output_of some ('specimen collection process' and has_specified_input some %))
OBI:0002500 amniotic fluid specimen ready for release A specimen that is derived from amniotic fluid. Chris Stoeckert, Penn Medicine Biobank Chris Stoeckert equivalent collecting specimen from organism amniotic fluid UBERON_0000173
OBI:0002501 bile specimen ready for release A specimen that is derived from bile. Chris Stoeckert, Penn Medicine Biobank Chris Stoeckert equivalent collecting specimen from organism bile UBERON_0001970
OBI:0002502 cerebrospinal fluid specimen ready for release A specimen that is derived from cerbrospinal fluid. Chris Stoeckert, Penn Medicine Biobank Chris Stoeckert equivalent collecting specimen from organism cerebrospinal fluid UBERON_0001359
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