Merge pull request galaxyproject#17116 from mvdbeek/fix_library_manif…

…est_upload

[23.1] Add missing optional description field, fixes ephemeris data library example

client/src/schema/schema.ts

@@ -2273,6 +2273,8 @@ export interface components {
              * @default false
              */
             deferred?: boolean;
+            /** Description */
+            description?: string;
             elements_from?: components["schemas"]["ElementsFromType"];
             /**
              * Ext
@@ -3723,6 +3725,8 @@ export interface components {
              * @default false
              */
             deferred?: boolean;
+            /** Description */
+            description?: string;
             elements_from?: components["schemas"]["ElementsFromType"];
             /**
              * Ext
@@ -3952,6 +3956,8 @@ export interface components {
              * @default false
              */
             deferred?: boolean;
+            /** Description */
+            description?: string;
             elements_from?: components["schemas"]["ElementsFromType"];
             /**
              * Ext
@@ -6457,6 +6463,8 @@ export interface components {
              * @default false
              */
             deferred?: boolean;
+            /** Description */
+            description?: string;
             /** Elements */
             elements: (
                 | (
@@ -7074,6 +7082,8 @@ export interface components {
              * @default false
              */
             deferred?: boolean;
+            /** Description */
+            description?: string;
             elements_from?: components["schemas"]["ElementsFromType"];
             /**
              * Ext
@@ -7135,6 +7145,8 @@ export interface components {
              * @default false
              */
             deferred?: boolean;
+            /** Description */
+            description?: string;
             elements_from?: components["schemas"]["ElementsFromType"];
             /**
              * Ext
@@ -7497,6 +7509,8 @@ export interface components {
              * @default false
              */
             deferred?: boolean;
+            /** Description */
+            description?: string;
             elements_from?: components["schemas"]["ElementsFromType"];
             /**
              * Ext
@@ -8384,6 +8398,8 @@ export interface components {
              * @default false
              */
             deferred?: boolean;
+            /** Description */
+            description?: string;
             elements_from?: components["schemas"]["ElementsFromType"];
             /**
              * Ext

lib/galaxy/schema/fetch_data.py

@@ -119,6 +119,7 @@ class BaseDataElement(FetchBaseModel):
     items_from: Optional[ElementsFromType] = Field(alias="elements_from")
     collection_type: Optional[str]
     MD5: Optional[str]
+    description: Optional[str]
 
     class Config:
         # reject unknown extra attributes

test/unit/webapps/api/test_fetch_schema.py

@@ -1,6 +1,8 @@
 from copy import deepcopy
 from json import dumps
 
+import yaml
+
 from galaxy.schema.fetch_data import (
     FetchDataPayload,
     FileDataElement,
@@ -121,6 +123,33 @@
     "auto_decompress": True,
 }
 
+library_payload = yaml.safe_load(
+    """
+destination:
+  type: library
+  name: "Cool Training Library"
+  description: "A longer description."
+  synopsis: "Optional - does anyone ever set this?"
+items:
+  - name: "Test Folder 1"
+    description: "Description of what is in Test Folder 1"  # Only populated with new API.
+    items:
+      - url: https://raw.githubusercontent.com/eteriSokhoyan/test-data/master/cliques-high-representatives.fa
+        src: url
+        ext: fasta
+        info: "A cool longer description."  # Only populated with new API.
+        dbkey: "hg19"  # Only populated with new API.
+  - name: "Test data segmentation-fold"
+    items:
+      - url: https://raw.githubusercontent.com/yhoogstrate/segmentation-fold/55d0bb28b01e613844ca35cf21fa41379fd72770/scripts/energy-estimation-utility/tests/test-data/workflow-test_cd-box_kturns.xml
+        name: workflow-test_cd-box_kturns.xml  # Only populated with new API.
+        info: Downloaded from https://raw.githubusercontent.com/yhoogstrate/segmentation-fold/55d0bb28b01e613844ca35cf21fa41379fd72770/scripts/energy-estimation-utility/tests/test-data/workflow-test_cd-box_kturns.xml
+        src: url
+        ext: xml
+
+"""
+)
+
 
 def test_fetch_data_schema():
     payload = FetchDataPayload(**example_payload)
@@ -156,5 +185,9 @@ def test_recursive_archive_form_like_data():
     FetchDataPayload(**payload)
 
 
-def test_nested_elemet_regression():
+def test_nested_element_regression():
     FetchDataPayload(**nested_element_regression_payload)
+
+
+def test_library_payload():
+    FetchDataPayload(targets=[library_payload], history_id=HISTORY_ID)