Fix packages' dependencies and MANIFEST.in files

Also:
- Add missing `graphene` and `graphql-core` dependencies to
  `pyproject.toml` (already installed as other dependencies' deps,
  but explicitly imported by ToolShed code).
- Move `test_tool_validation.py` unit tests to the galaxy-tool-shed
  package.

packages/test_driver/setup.cfg

@@ -40,8 +40,6 @@ install_requires =
     galaxy-util
     galaxy-web-apps
     pytest
-    graphene-sqlalchemy==3.0.0rc1  # these are only needed by tool shed - which we've split out but the test driver loads
-    starlette-graphene3
 packages = find:
 python_requires = >=3.8
 

packages/tool_shed/MANIFEST.in

@@ -1 +1,2 @@
 include *.rst *.txt LICENSE */py.typed
+graft tool_shed/webapp/templates/

packages/tool_shed/setup.cfg

@@ -32,8 +32,33 @@ version = 23.2.dev0
 [options]
 include_package_data = True
 install_requires =
+    galaxy-app
+    galaxy-auth
+    galaxy-config
+    galaxy-data
+    galaxy-util
+    galaxy-web-framework
     galaxy-web-stack
     galaxy-web-apps
+    a2wsgi
+    alembic
+    fastapi>=0.101.0
+    graphene
+    graphene-sqlalchemy>=3.0.0rc1
+    graphql-core
+    Mako
+    MarkupSafe
+    mercurial
+    Paste
+    pydantic>=2,!=2.6.0,!=2.6.1
+    Routes
+    SQLAlchemy>=2.0,<2.1
+    starlette
+    starlette-context
+    starlette-graphene3
+    typing-extensions
+    WebOb
+    Whoosh
 packages = find:
 python_requires = >=3.8
 

packages/web_apps/MANIFEST.in

@@ -7,5 +7,3 @@ prune galaxy/webapps/base/static/plugins/
 exclude galaxy/webapps/base/static/style/base.css
 exclude galaxy/webapps/base/static/welcome.html
 graft galaxy/webapps/base/templates/
-include tool_shed/webapp/model/migrate/migrate.cfg
-graft tool_shed/webapp/templates/

packages/web_apps/setup.cfg

@@ -49,7 +49,6 @@ install_requires =
     importlib-resources;python_version<'3.9'
     Mako
     MarkupSafe
-    mercurial
     Paste
     pydantic>=2,!=2.6.0,!=2.6.1
     PyJWT
@@ -67,7 +66,6 @@ install_requires =
     uvicorn
     uvloop
     WebOb
-    Whoosh
 packages = find:
 python_requires = >=3.8
 

pyproject.toml

@@ -61,7 +61,9 @@ fastapi-slim = ">=0.111.0"
 fs = "*"
 future = ">=1.0.0"  # Python 3.12 support
 galaxy_sequence_utils = "*"
-graphene-sqlalchemy = "3.0.0rc1"  # need a beta release to be compat. with starlette plugin
+graphene = "*"
+graphene-sqlalchemy = ">=3.0.0rc1"  # need a beta release to be compat. with starlette plugin
+graphql-core = "*"
 gravity = ">=1.0.4"
 gunicorn = "*"
 gxformat2 = "*"