This is the repository associated with the manuscript published in BMC genomics (https://doi.org/10.1186/s12864-022-08304-2):

Emergence of distinct syntenic density regimes is associated with early metazoan genomic transitions

Nicolas S. M. Robert, Fatih Sarigol, Bob Zimmermann, Axel Meyer, Christian R. Voolstra & Oleg Simakov

• The directory Detailed_Methods contains details about bash commands and scripts used in the analyses (links to sources are in there as well).
• The directory Figures contains the code used to generates the figures in the manuscript within R notebooks.
• The directory scripts contains the python scripts that were written and used in the analyses