FIX: Re-enable AFNI tests #421
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| name: Deps & CI | |
| on: [push] | |
| jobs: | |
| build-linux: | |
| if: "!contains(github.event.head_commit.message, '[skip ci]' && (github.event_name == 'push' || github.event.pull_request.head.repo.full_name != 'nipy/nitransforms'))" | |
| runs-on: ubuntu-latest | |
| env: | |
| TEST_DATA_HOME: /home/runner/testdata/nitransforms-tests | |
| strategy: | |
| max-parallel: 5 | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| steps: | |
| - name: Git settings (pacify DataLad) | |
| run: | | |
| git config --global user.name 'NiPreps Bot' | |
| git config --global user.email '[email protected]' | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v3 | |
| id: conda | |
| with: | |
| path: | | |
| /usr/share/miniconda/pkgs | |
| /home/runner/.cache/pip | |
| key: python-${{ matrix.python-version }}-v1 | |
| restore-keys: | | |
| python-${{ matrix.python-version }}- | |
| - name: Install DataLad | |
| run: | | |
| $CONDA/bin/conda install -c conda-forge git-annex datalad pip pytest | |
| $CONDA/bin/python -m pip install datalad-osf | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.TEST_DATA_HOME }} | |
| key: data-cache-v2 | |
| restore-keys: | | |
| data-cache-v2 | |
| - name: Install test data | |
| run: | | |
| export PATH=$CONDA/bin:$PATH | |
| mkdir -p /home/runner/testdata | |
| cd /home/runner/testdata | |
| $CONDA/bin/datalad install https://gin.g-node.org/oesteban/nitransforms-tests | |
| $CONDA/bin/datalad update --merge -d nitransforms-tests/ | |
| $CONDA/bin/datalad get -d nitransforms-tests/ | |
| - uses: actions/checkout@v3 | |
| - name: Install minimal dependencies | |
| run: | | |
| $CONDA/bin/pip install .[tests] | |
| - name: Run pytest | |
| run: | | |
| $CONDA/bin/pytest -v --cov nitransforms --cov-config .coveragerc --cov-report xml:cov.xml --doctest-modules nitransforms/ | |
| - name: Submit code coverage | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: cov.xml |