Merge pull request #220 from nipy/enh/reenable-parallelization-apply-… #447
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Deps & CI | |
| on: [push] | |
| jobs: | |
| build-linux: | |
| if: "!contains(github.event.head_commit.message, '[skip ci]' && (github.event_name == 'push' || github.event.pull_request.head.repo.full_name != 'nipy/nitransforms'))" | |
| runs-on: ubuntu-latest | |
| env: | |
| TEST_DATA_HOME: /home/runner/testdata/nitransforms-tests | |
| strategy: | |
| max-parallel: 5 | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| steps: | |
| - name: Git settings (pacify DataLad) | |
| run: | | |
| git config --global user.name 'NiPreps Bot' | |
| git config --global user.email '[email protected]' | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v3 | |
| id: conda | |
| with: | |
| path: | | |
| /usr/share/miniconda/pkgs | |
| /home/runner/.cache/pip | |
| key: python-${{ matrix.python-version }}-v1 | |
| restore-keys: | | |
| python-${{ matrix.python-version }}- | |
| - name: Install DataLad | |
| run: | | |
| $CONDA/bin/conda install -c conda-forge git-annex datalad pip pytest | |
| $CONDA/bin/python -m pip install datalad-osf | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.TEST_DATA_HOME }} | |
| key: data-cache-v2 | |
| restore-keys: | | |
| data-cache-v2 | |
| - name: Install test data | |
| run: | | |
| export PATH=$CONDA/bin:$PATH | |
| mkdir -p /home/runner/testdata | |
| cd /home/runner/testdata | |
| $CONDA/bin/datalad install https://gin.g-node.org/oesteban/nitransforms-tests | |
| $CONDA/bin/datalad update --merge -d nitransforms-tests/ | |
| $CONDA/bin/datalad get -d nitransforms-tests/ | |
| - uses: actions/checkout@v3 | |
| - name: Install minimal dependencies | |
| run: | | |
| $CONDA/bin/pip install .[tests] | |
| - name: Run pytest | |
| run: | | |
| $CONDA/bin/pytest -v --cov nitransforms --cov-config .coveragerc --cov-report xml:cov.xml --doctest-modules nitransforms/ | |
| - name: Submit code coverage | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: cov.xml |