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chore: Adopt src/ layout and tox #5

chore: Adopt src/ layout and tox

chore: Adopt src/ layout and tox #5

name: Build-Test-Deploy
on:
push:
branches:
- main
- master
- maint/*
tags:
- '*'
pull_request:
branches:
- main
- master
- maint/*
schedule:
# 8am EST / 9am EDT Mondays
- cron: '0 13 * * 1'
workflow_dispatch:
defaults:
run:
shell: bash
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
permissions:
contents: read
env:
# Force tox and pytest to use color
FORCE_COLOR: true
TEMPLATEFLOW_HOME: /tmp/templateflow
jobs:
build:
name: Build & verify package
runs-on: ubuntu-latest
permissions:
attestations: write
id-token: write
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- uses: hynek/build-and-inspect-python-package@v2
with:
attest-build-provenance-github: ${{ github.event_name != 'pull_request' }}
- uses: hynek/build-and-inspect-python-package@v2
with:
path: wrapper
upload-name-suffix: wrapper
attest-build-provenance-github: ${{ github.event_name != 'pull_request' }}
test:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: ['ubuntu-latest']
python-version: ['3.10', '3.11', '3.12', '3.13']
dependencies: [latest] # , pre]
architecture: ['x64']
include:
# Test minimum dependencies on oldest supported Python
- os: ubuntu-latest
python-version: "3.10"
dependencies: min
exclude:
# Do not test pre-releases for versions out of SPEC0
- os: ubuntu-latest
python-version: "3.10"
dependencies: pre
env:
DEPENDS: ${{ matrix.dependencies }}
steps:
- uses: actions/checkout@v4
- name: Install the latest version of uv
uses: astral-sh/setup-uv@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
architecture: ${{ matrix.architecture }}
- name: Display Python version
run: python -c "import sys; print(sys.version)"
- name: Restore cached templateflow
id: tf-cache-restore
uses: actions/cache@v4
with:
path: /tmp/templateflow
key: templateflow-v0
# Use the following to fall back to and build on v0 when bumping to v1
# If the cache need to be cleared, remove this when bumping key version
# restore-keys: |
# templateflow-v0
- name: Initialize templateflow
if: steps.tf-restore-cache.outputs.cache-hit != 'true'
run: |
uvx templateflow update --no-overwrite
- name: Install tox
run: |
uv tool install tox --with=tox-uv --with=tox-gh-actions
- name: Show tox config
run: tox c
- name: Run tox
run: tox -v --exit-and-dump-after 1200
- uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}
if: ${{ always() }}
test-packages:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: ['ubuntu-latest']
python-version: ['3.12']
env:
DEPENDS: ${{ matrix.dependencies }}
steps:
- name: Download packages built by build-and-inspect-python-package
uses: actions/download-artifact@v4
with:
name: Packages*
path: dist
- run: ls -lR
- uses: actions/checkout@v4
- name: Install the latest version of uv
uses: astral-sh/setup-uv@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Restore cached templateflow
id: tf-cache-restore
uses: actions/cache@v4
with:
path: /tmp/templateflow
key: templateflow-v0
# Use the following to fall back to and build on v0 when bumping to v1
# If the cache need to be cleared, remove this when bumping key version
# restore-keys: |
# templateflow-v0
- name: Check wrapper version
run: |
uv pip install dist/smriprep_docker*.whl
smriprep-docker --version
- name: Unpack sdist
run: |
tar --strip-components=1 xzf dist/smriprep-*.tar.gz
- name: Install tox
run: |
uv tool install tox --with=tox-uv --with=tox-gh-actions
- name: Show tox config
run: tox c
- name: Run tox
run: tox -v --exit-and-dump-after 1200
- uses: codecov/codecov-action@v4
with:
token: ${{ secrets.CODECOV_TOKEN }}
if: ${{ always() }}
publish:
name: Publish released package to pypi.org
if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags')
runs-on: ubuntu-latest
environment: PyPI
needs: [build, test]
permissions:
attestations: write
id-token: write
steps:
- name: Download packages built by build-and-inspect-python-package
uses: actions/download-artifact@v4
with:
name: Packages
path: dist
- name: Upload package to PyPI
uses: pypa/gh-action-pypi-publish@release/v1