chore: Adopt src/ layout and tox #2
Workflow file for this run
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| name: Build-Test-Deploy | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| - maint/* | |
| tags: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| - maint/* | |
| schedule: | |
| # 8am EST / 9am EDT Mondays | |
| - cron: '0 13 * * 1' | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read | |
| env: | |
| # Force tox and pytest to use color | |
| FORCE_COLOR: true | |
| TEMPLATEFLOW_HOME: /tmp/templateflow | |
| jobs: | |
| build: | |
| name: Build & verify package | |
| runs-on: ubuntu-latest | |
| permissions: | |
| attestations: write | |
| id-token: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: hynek/build-and-inspect-python-package@v2 | |
| with: | |
| attest-build-provenance-github: ${{ github.event_name != 'pull_request' }} | |
| - uses: hynek/build-and-inspect-python-package@v2 | |
| with: | |
| path: wrapper | |
| upload-name-suffix: wrapper | |
| attest-build-provenance-github: ${{ github.event_name != 'pull_request' }} | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| python-version: ['3.10', '3.11', '3.12', '3.13'] | |
| dependencies: [latest] # , pre] | |
| architecture: ['x64'] | |
| include: | |
| # Test minimum dependencies on oldest supported Python | |
| - os: ubuntu-latest | |
| python-version: "3.10" | |
| dependencies: min | |
| exclude: | |
| # Do not test pre-releases for versions out of SPEC0 | |
| - os: ubuntu-latest | |
| python-version: "3.10" | |
| dependencies: pre | |
| env: | |
| DEPENDS: ${{ matrix.dependencies }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: ${{ matrix.architecture }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Restore cached templateflow | |
| id: tf-cache-restore | |
| uses: actions/cache@v4 | |
| with: | |
| path: /tmp/templateflow | |
| key: templateflow-v0 | |
| # Use the following to fall back to and build on v0 when bumping to v1 | |
| # If the cache need to be cleared, remove this when bumping key version | |
| # restore-keys: | | |
| # templateflow-v0 | |
| - name: Install tox | |
| run: | | |
| uv tool install tox --with=tox-uv --with=tox-gh-actions | |
| - name: Show tox config | |
| run: tox c | |
| - name: Run tox | |
| run: tox -v --exit-and-dump-after 1200 | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| if: ${{ always() }} | |
| test-packages: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| python-version: ['3.12'] | |
| env: | |
| DEPENDS: ${{ matrix.dependencies }} | |
| steps: | |
| - name: Download packages built by build-and-inspect-python-package | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: Packages-* | |
| path: dist | |
| - run: ls -lR | |
| - uses: actions/checkout@v4 | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Restore cached templateflow | |
| id: tf-cache-restore | |
| uses: actions/cache@v4 | |
| with: | |
| path: /tmp/templateflow | |
| key: templateflow-v0 | |
| # Use the following to fall back to and build on v0 when bumping to v1 | |
| # If the cache need to be cleared, remove this when bumping key version | |
| # restore-keys: | | |
| # templateflow-v0 | |
| - name: Check wrapper version | |
| run: | | |
| uv pip install dist/smriprep_docker*.whl | |
| smriprep-docker --version | |
| - name: Unpack sdist | |
| run: | | |
| tar --strip-components=1 xzf dist/smriprep-*.tar.gz | |
| - name: Install tox | |
| run: | | |
| uv tool install tox --with=tox-uv --with=tox-gh-actions | |
| - name: Show tox config | |
| run: tox c | |
| - name: Run tox | |
| run: tox -v --exit-and-dump-after 1200 | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| if: ${{ always() }} | |
| publish: | |
| name: Publish released package to pypi.org | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| runs-on: ubuntu-latest | |
| environment: PyPI | |
| needs: [build, test] | |
| permissions: | |
| attestations: write | |
| id-token: write | |
| steps: | |
| - name: Download packages built by build-and-inspect-python-package | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: Packages | |
| path: dist | |
| - name: Upload package to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 |