linting: fix quickmerge test (galaxyproject#6404)

nilchia · Oct 3, 2024 · 9e4e8cf · 9e4e8cf
1 parent 238d099
commit 9e4e8cf
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Showing 2 changed files with 11 additions and 7 deletions.
diff --git a/tools/quickmerge/.lint_skip b/tools/quickmerge/.lint_skip
diff --git a/tools/quickmerge/quickmerge.xml b/tools/quickmerge/quickmerge.xml
@@ -260,13 +260,18 @@ out.delta > out.rq.delta
     <test expect_num_outputs="1">
       <param name="input_query" value="ecoli_nanopore.fasta" ftype="fasta" />
       <param name="input_ref" value="ecoli_illumina.fasta" ftype="fasta" />
-      <param name="advanced.nucmer_min_len" value="20" />
-      <param name="advanced.delta_min_len" value="0" />
-      <param name="advanced.hco" value="0" />
-      <param name="advanced.c" value="5000" />
-      <param name="advanced.l" value="1.5" />
-      <param name="advanced.ml" value="5.0" />
+      <section name="advanced">
+        <param name="nucmer_min_len" value="21" />
+        <param name="delta_min_len" value="1" />
+        <param name="hco" value="0" />
+        <param name="l" value="150" />
+        <param name="ml" value="4999" />
+        <param name="c" value="1.6" />
+      </section>
       <output name="merged_fasta" ftype="fasta" file="merged.fasta" />
+      <assert_command>
+        <has_text text="-hco 0"/>
+      </assert_command>
     </test>
   </tests>