Taxonkit (galaxyproject#6245)

* fix sample data and sample tests * fix tests
nilchia · Aug 15, 2024 · 5607ad5 · 5607ad5
1 parent 048d285
commit 5607ad5
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Showing 3 changed files with 10 additions and 3 deletions.
diff --git a/tools/taxonkit/tool-data/ncbi_taxonomy.loc.sample b/tools/taxonkit/tool-data/ncbi_taxonomy.loc.sample
@@ -1,2 +1 @@
-#value	name	path
-test-db-tox	"Test Database"  ${__HERE__}/test-db
+#value	name	path
diff --git a/tools/taxonkit/tool_data_table_conf.xml.sample b/tools/taxonkit/tool_data_table_conf.xml.sample
@@ -3,6 +3,6 @@
         <!-- Locations of taxonomy data downloaded from NCBI -->
     <table name="ncbi_taxonomy" comment_char="#">
         <columns>value, name, path</columns>
-        <file path="${__HERE__}/test-data/ncbi_taxonomy.loc.test" />
+        <file path="tool-data/ncbi_taxonomy.loc" />
     </table>
 </tables>
diff --git a/tools/taxonkit/tool_data_table_conf.xml.test b/tools/taxonkit/tool_data_table_conf.xml.test
@@ -0,0 +1,8 @@
+<?xml version="1.0"?>
+<tables>
+        <!-- Locations of taxonomy data downloaded from NCBI -->
+    <table name="ncbi_taxonomy" comment_char="#">
+        <columns>value, name, path</columns>
+        <file path="${__HERE__}/test-data/ncbi_taxonomy.loc.test" />
+    </table>
+</tables>