Set minimum requirement version for pillow and requests #145
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name: Python Test and Package | |
on: | |
push: | |
branches: | |
- main | |
tags: | |
- 'v*' | |
pull_request: | |
branches: | |
- main | |
jobs: | |
linting: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Set up Python 3.11 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.11 | |
- name: set PY | |
run: echo "PY=$(python -VV | sha256sum | cut -d' ' -f1)" >> $GITHUB_ENV | |
- uses: actions/cache@v4 | |
with: | |
path: ~/.cache/pre-commit | |
key: pre-commit|${{ env.PY }}|${{ hashFiles('.pre-commit-config.yaml') }} | |
- name: Linting | |
run: | | |
pip install pre-commit | |
pre-commit run --all-files | |
test: | |
needs: linting | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ['3.8', '3.9', '3.10', '3.11'] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Create LFS file list | |
run: | | |
git lfs ls-files -l | cut -d' ' -f1 | sort > .lfs-assets-id | |
- name: Restore LFS cache | |
uses: actions/cache@v4 | |
id: lfs-cache | |
with: | |
path: .git/lfs | |
key: lfs-v1-${{ hashFiles('.lfs-assets-id') }} | |
restore-keys: | |
lfs-v1- | |
- name: Git LFS Pull | |
run: | | |
git lfs pull | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install -e .[pylibjpeg,dev] | |
- name: Test with pytest | |
run: | | |
python -m pytest | |
package_docs: | |
needs: test | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Create LFS file list | |
run: | | |
git lfs ls-files -l | cut -d' ' -f1 | sort > .lfs-assets-id | |
- name: Restore LFS cache | |
uses: actions/cache@v4 | |
id: lfs-cache | |
with: | |
path: .git/lfs | |
key: lfs-v1-${{ hashFiles('.lfs-assets-id') }} | |
restore-keys: | |
lfs-v1- | |
- name: Git LFS Pull | |
run: | | |
git lfs pull | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.9 | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install build twine | |
- name: Build package | |
run: | | |
python -m build --wheel --sdist | |
python -m twine check dist/* | |
ls -la dist | |
- name: Upload package | |
if: github.event_name == 'push' | |
uses: actions/upload-artifact@v4 | |
with: | |
name: python-packages | |
path: dist | |
- name: Build Sphinx Documentation | |
run: | | |
python -m pip install dist/rap_sitkcore*.whl -r docs/requirements.txt | |
cd docs | |
make html | |
- name: Upload documentation | |
if: github.event_name == 'push' | |
uses: actions/upload-artifact@v4 | |
with: | |
name: sphinx-docs | |
path: docs/_build/html | |
- name: Update gh-pages | |
if: github.ref == 'refs/heads/main' | |
run: | | |
rm docs/_build/html/.buildinfo | |
touch docs/_build/html/.nojekyll | |
git update-ref refs/heads/${TARGET_BRANCH} origin/${TARGET_BRANCH} | |
./utils/update-gh-pages.sh docs/_build/html | |
repo_uri="https://x-access-token:${GITHUB_TOKEN}@github.com/${GITHUB_REPOSITORY}.git" | |
git push $repo_uri ${TARGET_BRANCH} | |
env: | |
GITHUB_TOKEN: ${{ secrets.github_token }} | |
TARGET_BRANCH: 'gh-pages' | |
github_publish: | |
if: startsWith(github.ref, 'refs/tags/v') | |
needs: package_docs | |
runs-on: ubuntu-latest | |
steps: | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.9 | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install twine | |
- uses: actions/download-artifact@v4 | |
id: download | |
with: | |
name: python-packages | |
- name: Create Release and Upload | |
if: startsWith(github.ref, 'refs/tags/v') | |
id: create_release | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
run: | | |
gh release create ${{ github.ref_name }} --repo ${{ github.repository }} --verify-tag --generate-notes --title "Release ${{ github.ref_name }}" | |
gh release upload ${{ github.ref_name }} --repo ${{ github.repository }} ${{ steps.download.outputs.download-path }}/rap_sitkcore* | |
- name: bcbb-pypi upload | |
run: | | |
python -m twine check ${{steps.download.outputs.download-path}}/* | |
python -m twine upload ${{steps.download.outputs.download-path}}/* | |
env: | |
TWINE_REPOSITORY_URL: https://artifactory.niaid.nih.gov/artifactory/api/pypi/bcbb-pypi | |
TWINE_PASSWORD: ${{secrets.BCBB_PYPI_PASSWORD}} | |
TWINE_USERNAME: ${{secrets.BCBB_PYPI_USERNAME}} |