Merge pull request #16 from nhs-r-community/corrections

Corrections
nhs-r-community · Oct 3, 2023 · 94e1285 · 94e1285
2 parents f07f7dc + 2ff2865
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diff --git a/README.md b/README.md
@@ -6,7 +6,9 @@
 
 This is a second edition of the [Introduction to R and R Studio material](https://github.com/nhs-r-community/intro_r/tree/main) which is 
 extended for data manipulation and broken into smaller chapters to offer greater
-flexibility for trainers. The link to the published materials is in a suggested
+flexibility for trainers. 
+
+The link to the published materials is in a suggested
 order.
 
 # Part 1
@@ -46,7 +48,7 @@ order.
 [Ongoing learning resources](https://nhs-r-community.github.io/intro_r/09-workshop-learning.html#1)  
 
 # Part 3
-[Introducing chart visualisations using {ggplot2](https://nhs-r-community.github.io/intro_r/04-workshop_ggplot2.html#1)
+[Introducing chart visualisations using {ggplot2}](https://nhs-r-community.github.io/intro_r/04-workshop_ggplot2.html#1)
 
 ## Break
 [Break](https://nhs-r-community.github.io/intro-r-rstudio/session-break-slide.html#/title-slide)  

diff --git a/_quarto.yml b/_quarto.yml
@@ -1,5 +1,15 @@
 project:
   title: "intro-r-nhse"
 #  output-dir: "/slides"
-
-
+author: "Zoë Turner"
+format:
+  revealjs:
+    theme: [default, nhsr-quarto.scss]
+    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
+    code-link: true
+    css: nhsr-quarto.scss
+    self-contained: true
+    preview-links: true  
+title-slide-attributes: 
+  data-background-color: "#43464B"
+embed-resources: true
diff --git a/session-break-slide.html b/session-break-slide.html
diff --git a/session-break-slide.qmd b/session-break-slide.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session - Break"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute: 
   echo: false
   eval: true

diff --git a/session-csv-url.html b/session-csv-url.html
diff --git a/session-csv-url.qmd b/session-csv-url.qmd
@@ -1,17 +1,7 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session - import csv from the web"
 author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
   echo: true
   eval: false    

diff --git a/session-csv.html b/session-csv.html
diff --git a/session-csv.qmd b/session-csv.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session - import csv"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
   echo: true
   eval: false    

diff --git a/session-datapasta.html b/session-datapasta.html
diff --git a/session-datapasta.qmd b/session-datapasta.qmd
@@ -1,17 +1,7 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session - import data {datapasta}"
 author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute: 
     eval: true
     echo: true

diff --git a/session-dplyr-showcase.html b/session-dplyr-showcase.html
diff --git a/session-dplyr-showcase.qmd b/session-dplyr-showcase.qmd
@@ -1,17 +1,7 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session  - Showing more {dplyr} functions"
 author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
   echo: true
   eval: true

diff --git a/session-dplyr-wrangling.html b/session-dplyr-wrangling.html
diff --git a/session-dplyr-wrangling.qmd b/session-dplyr-wrangling.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session  - Cleaning data with {dplyr}"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute: 
     echo: true
     eval: false
@@ -416,7 +405,7 @@ countdown::countdown(minutes = 10,
 beds_data |> 
   summarise(total_beds = sum(beds_av, na.rm = TRUE),
             total_occupancy = sum(occ_av, na.rm = TRUE),
-            .by = date) |> 
+            .by = org_name) |> 
   mutate(perc_occ = total_occupancy / total_beds) |> 
   arrange(desc(perc_occ))
 

diff --git a/session-intro.html b/session-intro.html
diff --git a/session-intro.qmd b/session-intro.qmd
@@ -1,21 +1,9 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session - Introduction"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute: 
   echo: false
   eval: false
-embed-resources: true  
 ---
 
 ## Agenda - session one (about 3.5 hours)

diff --git a/session-janitor.html b/session-janitor.html
diff --git a/session-janitor.qmd b/session-janitor.qmd
@@ -1,20 +1,9 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session - {janitor} clean data"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
   echo: true
-  eval: false    
+  eval: false
 ---
 
 

diff --git a/session-joins.html b/session-joins.html
diff --git a/session-joins.qmd b/session-joins.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session  - joins"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
   echo: true
   eval: false

diff --git a/session-messy-csv.html b/session-messy-csv.html
diff --git a/session-messy-csv.qmd b/session-messy-csv.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session - Import a messy csv"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
     echo: false
     eval: true

diff --git a/session-objects.html b/session-objects.html
diff --git a/session-objects.qmd b/session-objects.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session  - objects"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
     echo: true
     eval: true

diff --git a/session-packages.html b/session-packages.html
diff --git a/session-packages.qmd b/session-packages.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session  - Packages"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
     echo: true
     eval: false

diff --git a/session-projects.html b/session-projects.html
diff --git a/session-projects.qmd b/session-projects.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session - Projects"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute: 
     eval: false
     echo: false

diff --git a/session-quarto.html b/session-quarto.html
diff --git a/session-quarto.qmd b/session-quarto.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session  - quarto reporting"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
     echo: true
     eval: false

diff --git a/session-rstudio.html b/session-rstudio.html
diff --git a/session-rstudio.qmd b/session-rstudio.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session  - R and R studio"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
   echo: true
   eval: true   

diff --git a/session-sql.html b/session-sql.html
diff --git a/session-sql.qmd b/session-sql.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session  - SQL connections"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
   echo: true
   eval: false

diff --git a/session-stringr.html b/session-stringr.html
diff --git a/session-stringr.qmd b/session-stringr.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session  - {stringr}"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
   echo: true
   eval: false

diff --git a/session-styling.html b/session-styling.html
diff --git a/session-styling.qmd b/session-styling.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session  - styling code"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
   echo: true
   eval: false

diff --git a/session-vectors.html b/session-vectors.html
diff --git a/session-vectors.qmd b/session-vectors.qmd
@@ -1,17 +1,6 @@
 ---
 title: "Introduction to R and Rstudio"
-title-slide-attributes: 
-  data-background-color: "#43464B"
 subtitle: "Session  - Vectors"
-author: "Zoë Turner"
-format:
-  revealjs:
-    theme: [default, nhsr-quarto.scss]
-    logo: https://raw.githubusercontent.com/nhs-r-community/assets/main/logo/nhsr-logo.svg
-    code-link: true
-    css: nhsr-quarto.scss
-    self-contained: true
-    preview-links: true
 execute:
   echo: true
   eval: false