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Merge pull request #1100 from nf-core/TCLamnidis-patch-1 #2828

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Merge pull request #1100 from nf-core/TCLamnidis-patch-1

Merge pull request #1100 from nf-core/TCLamnidis-patch-1 #2828

Triggered via push December 3, 2024 15:29
@TCLamnidisTCLamnidis
pushed ef558bc
dev
Status Failure
Total duration 1m 15s
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ci.yml

on: push
Matrix: Run pipeline with test data
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31 errors and 1 warning
Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool adapter...
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool circularmapper --skip_p...
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool circularmapper --skip_p...
The operation was canceled.
Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool fastp -...
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool fastp -...
The operation was canceled.
Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bowtie2 --dam...
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bowtie2 --dam...
The operation was canceled.
Run pipeline with test data (23.04.0, -profile test_humanbam,docker --run_sexdeterrmine --run_gen...
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (23.04.0, -profile test_humanbam,docker --run_sexdeterrmine --run_gen...
The operation was canceled.
Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bwamem --run_...
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bwamem --run_...
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bwamem --run_mapdamage_...
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bwamem --run_mapdamage_...
The operation was canceled.
Run pipeline with test data (23.04.0, -profile test_humanbam,docker --run_mtnucratio --run_contam...
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (23.04.0, -profile test_humanbam,docker --run_mtnucratio --run_contam...
The operation was canceled.
Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool adapterremoval --...
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool adapterremoval --...
The operation was canceled.
Run pipeline with test data (23.04.0, -profile test_multiref,docker)
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (23.04.0, -profile test_multiref,docker)
The operation was canceled.
Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bowtie2 --damagecalcula...
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bowtie2 --damagecalcula...
The operation was canceled.
Run pipeline with test data (latest-everything, -profile test_multiref,docker)
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (latest-everything, -profile test_multiref,docker)
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run pipeline with test data (latest-everything, -profile test_humanbam,docker --run_mtnucratio --...
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (latest-everything, -profile test_humanbam,docker --run_mtnucratio --...
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool circularmappe...
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool circularmappe...
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool fastp --preproces...
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool fastp --preproces...
The operation was canceled.
Run pipeline with test data (latest-everything, -profile test_humanbam,docker --run_sexdeterrmine...
The job was canceled because "latest-everything_-prof_2" failed.
Run pipeline with test data (latest-everything, -profile test_humanbam,docker --run_sexdeterrmine...
Could not run 'nextflow help'. Error: The process '/opt/hostedtoolcache/nextflow/24.11.0-edge/x64/nextflow' failed with exit code 1
Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool adapter...
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636