Ampliseq Version 2.12.0

nf-core/ampliseq version 2.12.0 - 2024-11-15

Summary of changes

• updated some reference databases
• several bug fixes
• updated to nf-core template 3.0.2
• dependency updates

Detailed changes

Added

• #786 - Added version 20240904 of Kraken2 standard taxonomy database: standard=20240904 or standard as parameter to --kraken2_ref_taxonomy

Changed

• #785 - replaced https://data.ace.uq.edu.au/public/gtdb/data by https://data.gtdb.ecogenomic.org for GTDB versions via --dada_ref_taxonomy

Fixed

• #785,#795 - Template update for nf-core/tools version 3.0.2
• #786 - Creation of the summary report was failing with --dada_ref_taxonomy silva=132
• #792 - Remove white spaces in process tags to avoid errors on some systems

Dependencies

• #785 - Update MultiQC
• #793 - Update Picrust2 and nf-core modules

software	previously	now
MultiQC	1.21	1.25.1
Kraken2	2.1.2	2.1.3
Picrust2	2.5.2	2.5.3