Merge pull request #604 from nf-core/dev

Release 2.6.1
nf-core · Jun 27, 2023 · 3b252d2 · 3b252d2
2 parents 9ac22ba + cf80e34
commit 3b252d2
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diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -32,7 +32,7 @@ jobs:
           if [[ "${{ github.event_name }}" == "pull_request" && "${{ github.base_ref }}" == "dev" && "${{ matrix.NXF_VER }}" != "latest-everything" ]]; then
             echo matrix='["latest-everything"]' | tee -a $GITHUB_OUTPUT
           else
-            echo matrix='["latest-everything", "22.10.1"]' | tee -a $GITHUB_OUTPUT
+            echo matrix='["latest-everything", "23.04.0"]' | tee -a $GITHUB_OUTPUT
           fi
 
   test:

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,12 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## nf-core/ampliseq version 2.6.1 - 2023-06-27
+
+### `Fixed`
+
+- [#603](https://github.com/nf-core/ampliseq/pull/603) - Fix all containers registry
+
 ## nf-core/ampliseq version 2.6.0 - 2023-06-27
 
 ### `Added`

diff --git a/README.md b/README.md
@@ -6,7 +6,7 @@
 [![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.1493841-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.1493841)
 [![Cite Publication](https://img.shields.io/badge/Cite%20Us!-Cite%20Publication-important?labelColor=000000)](https://doi.org/10.3389/fmicb.2020.550420)
 
-[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A521.10.3-23aa62.svg?labelColor=000000)](https://www.nextflow.io/)
+[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A523.04.0-23aa62.svg?labelColor=000000)](https://www.nextflow.io/)
 [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
 [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/)
 [![run with singularity](https://img.shields.io/badge/run%20with-singularity-1d355c.svg?labelColor=000000)](https://sylabs.io/docs/)

diff --git a/conf/test_full.config b/conf/test_full.config
@@ -10,8 +10,6 @@
 ----------------------------------------------------------------------------------------
 */
 
-cleanup = true
-
 params {
     config_profile_name = 'Full test profile'
     config_profile_description = 'Full test dataset to check pipeline function'

diff --git a/modules.json b/modules.json
@@ -7,82 +7,82 @@
                 "nf-core": {
                     "custom/dumpsoftwareversions": {
                         "branch": "master",
-                        "git_sha": "76cc4938c1f6ea5c7d83fed1eeffc146787f9543",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["modules"]
                     },
                     "cutadapt": {
                         "branch": "master",
-                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
+                        "git_sha": "0efbaeb95c58da5a1096c99b5e919bc0c99cc952",
                         "installed_by": ["modules"]
                     },
                     "epang/place": {
                         "branch": "master",
-                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "epang/split": {
                         "branch": "master",
-                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "fastqc": {
                         "branch": "master",
-                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["modules"]
                     },
                     "gappa/examineassign": {
                         "branch": "master",
-                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "gappa/examinegraft": {
                         "branch": "master",
-                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "gappa/examineheattree": {
                         "branch": "master",
-                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "hmmer/eslalimask": {
                         "branch": "master",
-                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "hmmer/eslreformat": {
                         "branch": "master",
-                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "hmmer/hmmalign": {
                         "branch": "master",
-                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "hmmer/hmmbuild": {
                         "branch": "master",
-                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "mafft": {
                         "branch": "master",
-                        "git_sha": "b265b4ff6a35b133b963b4eaddfca0ffb3395236",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["fasta_newick_epang_gappa"]
                     },
                     "multiqc": {
                         "branch": "master",
-                        "git_sha": "f2d63bd5b68925f98f572eed70993d205cc694b7",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["modules"]
                     },
                     "vsearch/sintax": {
                         "branch": "master",
-                        "git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["modules"]
                     },
                     "vsearch/usearchglobal": {
                         "branch": "master",
-                        "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
+                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
                         "installed_by": ["modules"]
                     }
                 }
@@ -91,7 +91,7 @@
                 "nf-core": {
                     "fasta_newick_epang_gappa": {
                         "branch": "master",
-                        "git_sha": "6ad90f5583fb375c60a913a24ed1c79339efc019",
+                        "git_sha": "a9784afdd5dcda23b84e64db75dc591065d64653",
                         "installed_by": ["subworkflows"]
                     }
                 }

diff --git a/modules/local/assignsh.nf b/modules/local/assignsh.nf
@@ -5,7 +5,7 @@ process ASSIGNSH {
     conda "conda-forge::pandas=1.1.5"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pandas:1.1.5':
-        'quay.io/biocontainers/pandas:1.1.5' }"
+        'biocontainers/pandas:1.1.5' }"
 
     input:
     path asvtable

diff --git a/modules/local/barrnap.nf b/modules/local/barrnap.nf
@@ -5,7 +5,7 @@ process BARRNAP {
     conda "bioconda::barrnap=0.9"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/barrnap:0.9--hdfd78af_4' :
-        'quay.io/biocontainers/barrnap:0.9--hdfd78af_4' }"
+        'biocontainers/barrnap:0.9--hdfd78af_4' }"
 
     input:
     path(fasta)

diff --git a/modules/local/barrnapsummary.nf b/modules/local/barrnapsummary.nf
@@ -4,7 +4,7 @@ process BARRNAPSUMMARY {
     conda "conda-forge::python=3.9"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/python:3.9' :
-        'quay.io/biocontainers/python:3.9' }"
+        'biocontainers/python:3.9' }"
 
     input:
     path predictions

diff --git a/modules/local/combine_table.nf b/modules/local/combine_table.nf
@@ -4,7 +4,7 @@ process COMBINE_TABLE {
     conda "bioconda::bioconductor-biostrings=2.58.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-biostrings:2.58.0--r40h037d062_0' :
-        'quay.io/biocontainers/bioconductor-biostrings:2.58.0--r40h037d062_0' }"
+        'biocontainers/bioconductor-biostrings:2.58.0--r40h037d062_0' }"
 
     input:
     path(table)

diff --git a/modules/local/cutadapt_summary_merge.nf b/modules/local/cutadapt_summary_merge.nf
@@ -5,7 +5,7 @@ process CUTADAPT_SUMMARY_MERGE {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     val(action)

diff --git a/modules/local/dada2_addspecies.nf b/modules/local/dada2_addspecies.nf
@@ -6,7 +6,7 @@ process DADA2_ADDSPECIES {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     path(taxtable)

diff --git a/modules/local/dada2_denoising.nf b/modules/local/dada2_denoising.nf
@@ -6,7 +6,7 @@ process DADA2_DENOISING {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     tuple val(meta), path("filtered/*"), path(errormodel)

diff --git a/modules/local/dada2_err.nf b/modules/local/dada2_err.nf
@@ -5,7 +5,7 @@ process DADA2_ERR {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     tuple val(meta), path(reads)

diff --git a/modules/local/dada2_filtntrim.nf b/modules/local/dada2_filtntrim.nf
@@ -5,7 +5,7 @@ process DADA2_FILTNTRIM {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     tuple val(meta), path(reads), val(trunclenf), val(trunclenr)

diff --git a/modules/local/dada2_merge.nf b/modules/local/dada2_merge.nf
@@ -4,7 +4,7 @@ process DADA2_MERGE {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     path(files)

diff --git a/modules/local/dada2_quality.nf b/modules/local/dada2_quality.nf
@@ -5,7 +5,7 @@ process DADA2_QUALITY {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     tuple val(meta), path(reads)

diff --git a/modules/local/dada2_rmchimera.nf b/modules/local/dada2_rmchimera.nf
@@ -5,7 +5,7 @@ process DADA2_RMCHIMERA {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     tuple val(meta), path(seqtab)

diff --git a/modules/local/dada2_stats.nf b/modules/local/dada2_stats.nf
@@ -5,7 +5,7 @@ process DADA2_STATS {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     tuple val(meta), path("filter_and_trim_files/*"), path(denoised), path(mergers), path(seqtab_nochim)

diff --git a/modules/local/dada2_taxonomy.nf b/modules/local/dada2_taxonomy.nf
@@ -5,7 +5,7 @@ process DADA2_TAXONOMY {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     path(fasta)

diff --git a/modules/local/filter_codons.nf b/modules/local/filter_codons.nf
@@ -5,7 +5,7 @@ process FILTER_CODONS {
     conda "conda-forge::pandas=1.1.5"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pandas:1.1.5':
-        'quay.io/biocontainers/pandas:1.1.5' }"
+        'biocontainers/pandas:1.1.5' }"
 
     input:
     path(fasta)

diff --git a/modules/local/filter_len_asv.nf b/modules/local/filter_len_asv.nf
@@ -5,7 +5,7 @@ process FILTER_LEN_ASV {
     conda "bioconda::bioconductor-biostrings=2.58.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-biostrings:2.58.0--r40h037d062_0' :
-        'quay.io/biocontainers/bioconductor-biostrings:2.58.0--r40h037d062_0' }"
+        'biocontainers/bioconductor-biostrings:2.58.0--r40h037d062_0' }"
 
     input:
     path(fasta)

diff --git a/modules/local/filter_ssu.nf b/modules/local/filter_ssu.nf
@@ -5,7 +5,7 @@ process FILTER_SSU {
     conda "bioconductor::biostrings=2.58.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-biostrings:2.58.0--r40h037d062_0' :
-        'quay.io/biocontainers/bioconductor-biostrings:2.58.0--r40h037d062_0' }"
+        'biocontainers/bioconductor-biostrings:2.58.0--r40h037d062_0' }"
 
     input:
     path(fasta)

diff --git a/modules/local/filter_stats.nf b/modules/local/filter_stats.nf
@@ -4,7 +4,7 @@ process FILTER_STATS {
     conda "conda-forge::pandas=1.1.5"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pandas:1.1.5' :
-        'quay.io/biocontainers/pandas:1.1.5' }"
+        'biocontainers/pandas:1.1.5' }"
 
     input:
     path(unfiltered)

diff --git a/modules/local/format_fastainput.nf b/modules/local/format_fastainput.nf
@@ -4,7 +4,7 @@ process FORMAT_FASTAINPUT {
     conda "conda-forge::sed=4.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
-        'docker.io/ubuntu:20.04' }"
+        'nf-core/ubuntu:20.04' }"
 
     input:
     path(fastain)

diff --git a/modules/local/format_pplacetax.nf b/modules/local/format_pplacetax.nf
@@ -5,7 +5,7 @@ process FORMAT_PPLACETAX {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     tuple val(meta), path(tax)

diff --git a/modules/local/format_taxresults.nf b/modules/local/format_taxresults.nf
@@ -4,7 +4,7 @@ process FORMAT_TAXRESULTS {
     conda "conda-forge::pandas=1.1.5"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/pandas:1.1.5' :
-        'quay.io/biocontainers/pandas:1.1.5' }"
+        'biocontainers/pandas:1.1.5' }"
 
     input:
     path(taxtable)

diff --git a/modules/local/format_taxresults_sintax.nf b/modules/local/format_taxresults_sintax.nf
@@ -4,7 +4,7 @@ process FORMAT_TAXRESULTS_SINTAX {
     conda "conda-forge::python=3.9"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/python:3.9' :
-        'quay.io/biocontainers/python:3.9' }"
+        'biocontainers/python:3.9' }"
 
     input:
     tuple val(meta), path(taxtable)

diff --git a/modules/local/itsx_cutasv.nf b/modules/local/itsx_cutasv.nf
@@ -4,7 +4,7 @@ process ITSX_CUTASV {
     conda "bioconda::itsx=1.1.3"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/itsx:1.1.3--hdfd78af_1' :
-        'quay.io/biocontainers/itsx:1.1.3--hdfd78af_1' }"
+        'biocontainers/itsx:1.1.3--hdfd78af_1' }"
 
     input:
     path fasta

diff --git a/modules/local/merge_stats.nf b/modules/local/merge_stats.nf
@@ -4,7 +4,7 @@ process MERGE_STATS {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     path('file1.tsv')

diff --git a/modules/local/metadata_all.nf b/modules/local/metadata_all.nf
@@ -5,7 +5,7 @@ process METADATA_ALL {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     path(metadata)

diff --git a/modules/local/metadata_pairwise.nf b/modules/local/metadata_pairwise.nf
@@ -5,7 +5,7 @@ process METADATA_PAIRWISE {
     conda "bioconda::bioconductor-dada2=1.22.0 conda-forge::r-digest=0.6.30"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/bioconductor-dada2:1.22.0--r41h399db7b_0' :
-        'quay.io/biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
+        'biocontainers/bioconductor-dada2:1.22.0--r41h399db7b_0' }"
 
     input:
     path(metadata)