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Ingest: Derive url and use accession fields during ingest #78

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merged 3 commits into from
Dec 17, 2024

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@j23414 j23414 commented Dec 12, 2024

Description of proposed changes

Add URL and accession fields during the ingest workflow, to automatically have the node-call out work and simplify the USVI merging.

Perhaps wait until final results of related PR to pathogen-repo-guide, to see if the jq method is acceptable [Nope, reverted to csvtk method]

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@j23414 j23414 changed the title wip: add url during ingest wip: add url and accession fields during ingest Dec 12, 2024
@j23414 j23414 force-pushed the j23414/ingest-add-url branch from dd83000 to fbdfbe8 Compare December 16, 2024 23:06
@j23414 j23414 force-pushed the j23414/ingest-add-url branch from fbdfbe8 to 77fa1a4 Compare December 16, 2024 23:09
@j23414 j23414 changed the title wip: add url and accession fields during ingest Ingest: Derive url and use accession fields during ingest Dec 16, 2024
@j23414 j23414 marked this pull request as ready for review December 16, 2024 23:14
@j23414 j23414 merged commit de4b930 into main Dec 17, 2024
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@j23414 j23414 deleted the j23414/ingest-add-url branch December 17, 2024 19:36
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2 participants