Use phylogenetic/bin to match ingest/bin

nextstrain · Jul 2, 2024 · 9ca6f27 · 9ca6f27
1 parent d588b41
commit 9ca6f27
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Showing 3 changed files with 1 addition and 1 deletion.
diff --git a/...ic/scripts/check-countries-have-colors.sh → ...enetic/bin/check-countries-have-colors.sh b/...ic/scripts/check-countries-have-colors.sh → ...enetic/bin/check-countries-have-colors.sh
diff --git a/...ogenetic/scripts/set_final_strain_name.py → phylogenetic/bin/set_final_strain_name.py b/...ogenetic/scripts/set_final_strain_name.py → phylogenetic/bin/set_final_strain_name.py
diff --git a/phylogenetic/rules/export.smk b/phylogenetic/rules/export.smk
@@ -66,7 +66,7 @@ rule final_strain_name:
         display_strain_field=config.get("display_strain_field", "strain"),
     shell:
         """
-        python3 scripts/set_final_strain_name.py \
+        python3 bin/set_final_strain_name.py \
             --metadata {input.metadata} \
             --metadata-id-columns {params.strain_id} \
             --input-auspice-json {input.auspice_json} \