Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Replace deprecated seq.ungap() #51

Merged
merged 1 commit into from
Dec 22, 2023

Conversation

victorlin
Copy link
Member

@victorlin victorlin commented Dec 22, 2023

Description of proposed changes

This was deprecated in Biopython 1.79 and removed in 1.82.¹

¹ https://github.com/biopython/biopython/blob/15dcc258a2941910fcedcb641777d2c15244d1cb/DEPRECATED.rst#bioseqsequngap

Related issue(s)

Discovered in nextstrain/docker-base#200 (comment)

Checklist

  • Checks pass

@victorlin victorlin self-assigned this Dec 22, 2023
@victorlin victorlin merged commit f8b5493 into master Dec 22, 2023
3 checks passed
@victorlin victorlin deleted the victorlin/biopython-compatibility branch December 22, 2023 22:43
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant