Rebuild RSV analysis #98

	name: Rebuild RSV analysis

	on:
	schedule:
	# Note times are in UTC, which is 1 or 2 hours behind CET depending on daylight savings.
	#
	# Note the actual runs might be late.
	# Numerous people were confused, about that, including me:
	# - https://github.community/t/scheduled-action-running-consistently-late/138025/11
	# - https://github.com/github/docs/issues/3059
	#
	# Note, '*' is a special character in YAML, so you have to quote this string.
	#
	# Docs:
	# - https://docs.github.com/en/actions/learn-github-actions/events-that-trigger-workflows#schedule
	#
	# Tool that deciphers this particular format of crontab string:
	# - https://crontab.guru/
	#
	# Runs at 4pm UTC (12pm EDT) since curation by NCBI happens on the East Coast.
	- cron: '0 19 * * 2'

	repository_dispatch:
	types:
	- rebuild

	workflow_dispatch:

	jobs:
	rebuild_rsv:
	permissions:
	id-token: write
	uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master
	secrets: inherit
	with:
	runtime: aws-batch
	run: \|
	nextstrain build \
	--aws-batch \
	--detach \
	--no-download \
	--cpus 16 \
	--memory 64gib \
	--env AWS_ACCESS_KEY_ID \
	--env AWS_SECRET_ACCESS_KEY \
	. \
	deploy \
	--configfiles config/configfile.yaml config/nextstrain_automation.yaml \
	--printshellcmds

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