Merge pull request #127 from nextstrain/mpox-shortcuts

Add shortcuts to mpox datasets
nextstrain · Jan 10, 2024 · 8cd66f1 · 8cd66f1
2 parents 8d7a3a6 + 5acdad4
commit 8cd66f1
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Showing 7 changed files with 30 additions and 0 deletions.
diff --git a/data/nextstrain/mpox/all-clades/pathogen.json b/data/nextstrain/mpox/all-clades/pathogen.json
@@ -206,6 +206,10 @@
     }
   },
   "schemaVersion": "3.0.0",
+  "shortcuts": [
+    "MPXV",
+    "nextstrain/mpox"
+  ],
   "version": {
     "tag": "unreleased"
   }

diff --git a/data/nextstrain/mpox/clade-iib/pathogen.json b/data/nextstrain/mpox/clade-iib/pathogen.json
@@ -86,6 +86,9 @@
     }
   },
   "schemaVersion": "3.0.0",
+  "shortcuts": [
+    "hMPXV"
+  ],
   "version": {
     "tag": "unreleased"
   }

diff --git a/data/nextstrain/mpox/lineage-b.1/pathogen.json b/data/nextstrain/mpox/lineage-b.1/pathogen.json
@@ -278,6 +278,9 @@
     }
   },
   "schemaVersion": "3.0.0",
+  "shortcuts": [
+    "hMPXV_B1"
+  ],
   "version": {
     "tag": "unreleased"
   }

diff --git a/data_output/index.json b/data_output/index.json
@@ -1162,6 +1162,10 @@
         },
         {
           "path": "nextstrain/mpox/all-clades",
+          "shortcuts": [
+            "MPXV",
+            "nextstrain/mpox"
+          ],
           "enabled": true,
           "attributes": {
             "name": "Mpox virus (All clades)",
@@ -1205,6 +1209,9 @@
         },
         {
           "path": "nextstrain/mpox/clade-iib",
+          "shortcuts": [
+            "hMPXV"
+          ],
           "enabled": true,
           "attributes": {
             "name": "Mpox virus (Clade IIb)",
@@ -1249,6 +1256,9 @@
         },
         {
           "path": "nextstrain/mpox/lineage-b.1",
+          "shortcuts": [
+            "hMPXV_B1"
+          ],
           "enabled": true,
           "attributes": {
             "name": "Mpox virus (Lineage B.1)",

diff --git a/data_output/nextstrain/mpox/all-clades/unreleased/pathogen.json b/data_output/nextstrain/mpox/all-clades/unreleased/pathogen.json
@@ -206,6 +206,10 @@
     }
   },
   "schemaVersion": "3.0.0",
+  "shortcuts": [
+    "MPXV",
+    "nextstrain/mpox"
+  ],
   "version": {
     "tag": "unreleased"
   }

diff --git a/data_output/nextstrain/mpox/clade-iib/unreleased/pathogen.json b/data_output/nextstrain/mpox/clade-iib/unreleased/pathogen.json
@@ -86,6 +86,9 @@
     }
   },
   "schemaVersion": "3.0.0",
+  "shortcuts": [
+    "hMPXV"
+  ],
   "version": {
     "tag": "unreleased"
   }

diff --git a/data_output/nextstrain/mpox/lineage-b.1/unreleased/pathogen.json b/data_output/nextstrain/mpox/lineage-b.1/unreleased/pathogen.json
@@ -278,6 +278,9 @@
     }
   },
   "schemaVersion": "3.0.0",
+  "shortcuts": [
+    "hMPXV_B1"
+  ],
   "version": {
     "tag": "unreleased"
   }