Merge pull request #130 from nextstrain/feat/add-sc2-shortcuts

nextstrain · Jan 15, 2024 · 699c271 · 699c271
2 parents ed6b6a7 + b402c8c
commit 699c271
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Showing 5 changed files with 22 additions and 4 deletions.
diff --git a/data/nextstrain/sars-cov-2/BA.2/pathogen.json b/data/nextstrain/sars-cov-2/BA.2/pathogen.json
@@ -223215,5 +223215,8 @@
   "attributes": {
     "name": "SARS-CoV-2 (BA.2)",
     "reference name": "Wuhan-Hu-1 with BA.2 SNPs"
-  }
+  },
+  "shortcuts": [
+    "sars-cov-2-21L"
+  ]
 }
diff --git a/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json b/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json
@@ -6435,5 +6435,8 @@
     "name": "SARS-CoV-2",
     "reference name": "Wuhan-Hu-1/2019",
     "reference accession": "MN908947"
-  }
+  },
+  "shortcuts": [
+    "sars-cov-2"
+  ]
 }
diff --git a/data_output/index.json b/data_output/index.json
@@ -26,6 +26,9 @@
       "datasets": [
         {
           "path": "nextstrain/sars-cov-2/wuhan-hu-1/orfs",
+          "shortcuts": [
+            "sars-cov-2"
+          ],
           "enabled": true,
           "attributes": {
             "name": "SARS-CoV-2",
@@ -168,6 +171,9 @@
         },
         {
           "path": "nextstrain/sars-cov-2/BA.2",
+          "shortcuts": [
+            "sars-cov-2-21L"
+          ],
           "enabled": true,
           "attributes": {
             "name": "SARS-CoV-2 (BA.2)",

diff --git a/data_output/nextstrain/sars-cov-2/BA.2/unreleased/pathogen.json b/data_output/nextstrain/sars-cov-2/BA.2/unreleased/pathogen.json
@@ -223215,5 +223215,8 @@
   "attributes": {
     "name": "SARS-CoV-2 (BA.2)",
     "reference name": "Wuhan-Hu-1 with BA.2 SNPs"
-  }
+  },
+  "shortcuts": [
+    "sars-cov-2-21L"
+  ]
 }
diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/pathogen.json b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/pathogen.json
@@ -6435,5 +6435,8 @@
     "name": "SARS-CoV-2",
     "reference name": "Wuhan-Hu-1/2019",
     "reference accession": "MN908947"
-  }
+  },
+  "shortcuts": [
+    "sars-cov-2"
+  ]
 }