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Use weighted sampling for recent samples in global builds #1161

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merged 1 commit into from
Dec 17, 2024
Merged

Use weighted sampling for recent samples in global builds #1161

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3 changes: 3 additions & 0 deletions nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -294,6 +294,7 @@ subsampling:
max_date: "--max-date 1M"
recent:
group_by: "country week"
group_by_weights: "defaults/population_weights.tsv"
max_sequences: 4100
min_date: "--min-date 1M"

Expand All @@ -308,6 +309,7 @@ subsampling:
max_date: "--max-date 2M"
recent:
group_by: "country week"
group_by_weights: "defaults/population_weights.tsv"
max_sequences: 4100
min_date: "--min-date 2M"

Expand All @@ -322,6 +324,7 @@ subsampling:
max_date: "--max-date 6M"
recent:
group_by: "country year month"
group_by_weights: "defaults/population_weights.tsv"
max_sequences: 4100
min_date: "--min-date 6M"

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3 changes: 3 additions & 0 deletions nextstrain_profiles/nextstrain-gisaid/builds.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -286,6 +286,7 @@ subsampling:
max_date: "--max-date 1M"
recent:
group_by: "country week"
group_by_weights: "defaults/population_weights.tsv"
max_sequences: 4100
min_date: "--min-date 1M"

Expand All @@ -300,6 +301,7 @@ subsampling:
max_date: "--max-date 2M"
recent:
group_by: "country week"
group_by_weights: "defaults/population_weights.tsv"
max_sequences: 4100
min_date: "--min-date 2M"

Expand All @@ -314,6 +316,7 @@ subsampling:
max_date: "--max-date 6M"
recent:
group_by: "country year month"
group_by_weights: "defaults/population_weights.tsv"
max_sequences: 4100
min_date: "--min-date 6M"

Expand Down
3 changes: 3 additions & 0 deletions nextstrain_profiles/nextstrain-open/builds.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -286,6 +286,7 @@ subsampling:
max_date: "--max-date 1M"
recent:
group_by: "country week"
group_by_weights: "defaults/population_weights.tsv"
max_sequences: 4100
min_date: "--min-date 1M"

Expand All @@ -300,6 +301,7 @@ subsampling:
max_date: "--max-date 2M"
recent:
group_by: "country week"
group_by_weights: "defaults/population_weights.tsv"
max_sequences: 4100
min_date: "--min-date 2M"

Expand All @@ -314,6 +316,7 @@ subsampling:
max_date: "--max-date 6M"
recent:
group_by: "country year month"
group_by_weights: "defaults/population_weights.tsv"
max_sequences: 4100
min_date: "--min-date 6M"

Expand Down
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