Designate clades 24A (JN.1) and 24B (JN.1.11.1) (#1103)

* Designate clade 23A (JN.1) * Add clade 24B = JN.1.11.1
nextstrain · Apr 5, 2024 · 1f7265a · 1f7265a
1 parent 2bb77f6
commit 1f7265a
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Showing 6 changed files with 19 additions and 5 deletions.
diff --git a/defaults/clade_display_names.yml b/defaults/clade_display_names.yml
@@ -38,3 +38,5 @@
 23G: 23G (XBB.1.5.70)
 23H: 23H (HK.3)
 23I: 23I (BA.2.86)
+24A: 24A (JN.1)
+24B: 24B (JN.1.11.1)
diff --git a/defaults/clade_emergence_dates.tsv b/defaults/clade_emergence_dates.tsv
@@ -40,3 +40,5 @@ Nextstrain_clade	first_sequence
 23G	2023-01-01
 23H	2023-03-01
 23I	2023-04-01
+24A	2023-07-01
+24B	2023-11-01
diff --git a/defaults/clade_hierarchy.tsv b/defaults/clade_hierarchy.tsv
@@ -38,3 +38,5 @@ clade	parent	WHO
 23G	23A	Omicron
 23H	23F	Omicron
 23I	21L	Omicron
+24A	23I	Omicron
+24B	24A	Omicron
diff --git a/defaults/clades.tsv b/defaults/clades.tsv
@@ -219,3 +219,14 @@ clade	gene	site	alt
 23I	nuc	897	A
 23I	nuc	15756	A
 23I	nuc	28958	A
+
+24A	clade	23I
+24A	nuc	11727	A
+24A	nuc	22926	C
+24A	nuc	27810	C
+
+24B	clade	24A
+24B	nuc	7113	T
+24B	nuc	17334	T
+24B	nuc	22928	C
+24B	nuc	24872	T
diff --git a/defaults/color_ordering.tsv b/defaults/color_ordering.tsv
@@ -34038,6 +34038,8 @@ clade_membership	23F (EG.5.1)
 clade_membership	23G (XBB.1.5.70)
 clade_membership	23H (HK.3)
 clade_membership	23I (BA.2.86)
+clade_membership	24A (JN.1)
+clade_membership	24B (JN.1.11.1)
 
 ################
 
@@ -34058,7 +34060,6 @@ emerging_lineage	HV.1
 emerging_lienage	GW.5
 emerging_lineage	JD.1
 emerging_lineage	XBB.1.41
-emerging_lineage	JN.1
 
 ################
 

diff --git a/defaults/emerging_lineages.tsv b/defaults/emerging_lineages.tsv
@@ -309,7 +309,3 @@ JD.1	nuc	22928	C
 XBB.1.41	clade	22F
 XBB.1.41	nuc	1473	T
 XBB.1.41	nuc	20102	T
-
-JN.1	clade	23I
-JN.1	nuc	11727	A
-JN.1	nuc	22926	C