Fix snakemake rule existence checks #886
Workflow file for this run
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| name: CI | |
| on: | |
| - push | |
| - pull_request | |
| jobs: | |
| test-build: | |
| uses: nextstrain/.github/.github/workflows/pathogen-repo-ci.yaml@master | |
| with: | |
| build-args: all_regions -j 2 --profile nextstrain_profiles/nextstrain-ci | |
| test-cram: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.9" | |
| - run: pip install cram nextstrain-augur | |
| - run: cram --shell=/bin/bash tests/sanitize-metadata.t | |
| docs: | |
| uses: nextstrain/.github/.github/workflows/docs-ci.yaml@master | |
| with: | |
| docs-directory: docs/ | |
| environment-file: docs/conda.yml |