Revert to previous minimum glibc version of ≥2.17 instead of ≥2.28 #93
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Setup successfully on macOS 13.6
output snippet
Setting up conda…
Removing existing directory /Users/vlin/.nextstrain/runtimes/conda/micromamba to start fresh…
Requesting Micromamba from https://api.anaconda.org/download/conda-forge/micromamba/1.1.0/osx-64/micromamba-1.1.0-1.tar.bz2…
Downloading and extracting Micromamba to /Users/vlin/.nextstrain/runtimes/conda/micromamba…
Removing existing directory /Users/vlin/.nextstrain/runtimes/conda/env to start fresh…
Installing Conda packages into /Users/vlin/.nextstrain/runtimes/conda/env…
- nextstrain-base ==20240916T182550Z
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nextstrain/label/pull-93/osx-64 4.6kB @ 9.9kB/s 0.5s
nextstrain/label/pull-93/noarch 130.0 B @ 239.0 B/s 0.5s
bioconda/osx-64 4.6MB @ 6.0MB/s 0.8s
bioconda/noarch 5.2MB @ 4.4MB/s 0.8s
conda-forge/noarch 19.0MB @ 7.7MB/s 2.8s
conda-forge/osx-64 39.3MB @ 6.9MB/s 6.4s
Transaction
Prefix: /Users/vlin/.nextstrain/runtimes/conda/env
Updating specs:
- nextstrain-base==20240916T182550Z
Package Version Build Channel Size
──────────────────────────────────────────────────────────────────────────────────────────────────────────────────
Install:
──────────────────────────────────────────────────────────────────────────────────────────────────────────────────
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+ pyu2f 0.1.5 pyhd8ed1ab_0 conda-forge/noarch 32kB
+ pyyaml 6.0.2 py311h3336109_1 conda-forge/osx-64 194kB
+ qhull 2020.2 h3c5361c_5 conda-forge/osx-64 528kB
+ raxml 8.2.13 h8af04d4_2 bioconda/osx-64 3MB
+ re2 2023.09.01 hb168e87_2 conda-forge/osx-64 27kB
+ readline 8.2 h9e318b2_1 conda-forge/osx-64 256kB
+ requests 2.32.3 pyhd8ed1ab_0 conda-forge/noarch 59kB
+ reretry 0.11.8 pyhd8ed1ab_0 conda-forge/noarch 12kB
+ rich 13.8.1 pyhd8ed1ab_0 conda-forge/noarch 185kB
+ rsa 4.9 pyhd8ed1ab_0 conda-forge/noarch 30kB
+ ruamel.yaml 0.17.21 py311h5547dcb_3 conda-forge/osx-64 261kB
+ ruamel.yaml.clib 0.2.7 py311h2725bcf_2 conda-forge/osx-64 117kB
+ ruby 3.3.3 ha604482_0 conda-forge/osx-64 9MB
+ s3fs 2024.9.0 pyhd8ed1ab_0 conda-forge/noarch 32kB
+ s3transfer 0.10.2 pyhd8ed1ab_0 conda-forge/noarch 63kB
+ scikit-learn 1.4.2 py311h3c3ac6d_1 conda-forge/osx-64 9MB
+ scipy 1.14.1 py311hb3ed397_0 conda-forge/osx-64 16MB
+ seqkit 2.8.2 h527b516_1 bioconda/osx-64 8MB
+ setuptools 73.0.1 pyhd8ed1ab_0 conda-forge/noarch 1MB
+ setuptools-scm 8.1.0 pyhd8ed1ab_0 conda-forge/noarch 38kB
+ six 1.16.0 pyh6c4a22f_0 conda-forge/noarch 14kB
+ slacker 0.14.0 py_0 conda-forge/noarch 16kB
+ smart_open 7.0.4 pyhd8ed1ab_0 conda-forge/noarch 52kB
+ smmap 5.0.0 pyhd8ed1ab_0 conda-forge/noarch 22kB
+ snakemake 7.32.4 hdfd78af_1 bioconda/noarch 9kB
+ snakemake-minimal 7.32.4 pyhdfd78af_1 bioconda/noarch 278kB
+ sqlite 3.46.1 he26b093_0 conda-forge/osx-64 912kB
+ stone 3.3.2 pyhd8ed1ab_0 conda-forge/noarch 119kB
+ stopit 1.1.2 py_0 conda-forge/noarch 16kB
+ suitesparse 7.8.2 ha93ada7_0 conda-forge/osx-64 2MB
+ tabulate 0.9.0 pyhd8ed1ab_1 conda-forge/noarch 36kB
+ tbb 2021.13.0 h37c8870_0 conda-forge/osx-64 159kB
+ threadpoolctl 3.5.0 pyhc1e730c_0 conda-forge/noarch 24kB
+ throttler 1.2.2 pyhd8ed1ab_0 conda-forge/noarch 12kB
+ tk 8.6.13 h1abcd95_1 conda-forge/osx-64 3MB
+ tomli 2.0.1 pyhd8ed1ab_0 conda-forge/noarch 16kB
+ toposort 1.10 pyhd8ed1ab_0 conda-forge/noarch 14kB
+ tqdm 4.66.5 pyhd8ed1ab_0 conda-forge/noarch 90kB
+ traitlets 5.14.3 pyhd8ed1ab_0 conda-forge/noarch 110kB
+ treetime 0.11.4 pyhdfd78af_0 bioconda/noarch 122kB
+ tsv-utils 2.2.3 hfdf4475_7 conda-forge/osx-64 2MB
+ typing-extensions 4.12.2 hd8ed1ab_0 conda-forge/noarch 10kB
+ typing_extensions 4.12.2 pyha770c72_0 conda-forge/noarch 40kB
+ tzdata 2024a h8827d51_1 conda-forge/noarch 124kB
+ ubiquerg 0.8.0 pyhd8ed1ab_0 conda-forge/noarch 21kB
+ umap-learn 0.5.6 py311h6eed73b_1 conda-forge/osx-64 189kB
+ unzip 6.0 h0d85af4_3 conda-forge/osx-64 170kB
+ uritemplate 4.1.1 pyhd8ed1ab_0 conda-forge/noarch 12kB
+ urllib3 1.26.19 pyhd8ed1ab_0 conda-forge/noarch 115kB
+ vcftools 0.1.16 pl5321h447d7a5_11 bioconda/osx-64 483kB
+ veracitools 0.1.3 py_0 conda-forge/noarch 6kB
+ wcmatch 9.0 pyhd8ed1ab_0 conda-forge/noarch 37kB
+ wcwidth 0.2.13 pyhd8ed1ab_0 conda-forge/noarch 33kB
+ wget 1.21.4 hca547e6_0 conda-forge/osx-64 778kB
+ wheel 0.44.0 pyhd8ed1ab_0 conda-forge/noarch 59kB
+ wrapt 1.16.0 py311h3336109_1 conda-forge/osx-64 60kB
+ xopen 2.0.2 pyh707e725_1 conda-forge/noarch 22kB
+ xorg-libxau 1.0.11 h0dc2134_0 conda-forge/osx-64 13kB
+ xorg-libxdmcp 1.1.3 h35c211d_0 conda-forge/osx-64 17kB
+ xz 5.2.6 h775f41a_0 conda-forge/osx-64 238kB
+ yaml 0.2.5 h0d85af4_2 conda-forge/osx-64 84kB
+ yarl 1.9.4 py311h3336109_1 conda-forge/osx-64 113kB
+ yte 1.5.4 pyha770c72_0 conda-forge/noarch 14kB
+ zip 3.0 h0dc2134_3 conda-forge/osx-64 173kB
+ zipp 3.20.2 pyhd8ed1ab_0 conda-forge/noarch 21kB
+ zlib 1.3.1 h87427d6_1 conda-forge/osx-64 89kB
+ zlib-ng 2.2.1 hf036a51_0 conda-forge/osx-64 104kB
+ zstandard 0.23.0 py311hdf6fcd6_1 conda-forge/osx-64 411kB
+ zstd 1.5.6 h915ae27_0 conda-forge/osx-64 499kB
Summary:
Install: 320 packages
Total download: 498MB
|
An alternative implementation if pinning diff --git a/devel/build b/devel/build
index 2c4f866..eba094e 100755
--- a/devel/build
+++ b/devel/build
@@ -59,7 +59,8 @@ lock() {
| .build.string = $rendered[0].build.string + "_locked"
| .requirements.run = (
$rendered[0].requirements.run
- | map(split(" ") | "\(.[0]) ==\(.[1]) \(.[2])"))
+ | map(select(startswith("__glibc") | not))
+ | map(split(" ") | "\(.[0]) ==\(.[1]) \(.[2])"))
' \
< src/recipe.yaml \
> locked/recipe.yaml
diff --git a/src/recipe.yaml b/src/recipe.yaml
index 79ce175..1b72919 100644
--- a/src/recipe.yaml
+++ b/src/recipe.yaml
@@ -98,4 +98,4 @@ requirements:
#
# ¹ <https://github.com/conda-forge/c-ares-feedstock/pull/38>
# ² <https://github.com/nextstrain/conda-base/issues/92>
- - c-ares <1.33.0
+ - sel(linux): __glibc <2.28 |
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Resolves: #92
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