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Ingest with nextclade#62

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joverlee521 wants to merge 5 commits intomasternextstrain/avian-flu:masterfrom ingest-with-nextcladenextstrain/avian-flu:ingest-with-nextcladeCopy head branch name to clipboard

+152-2

Commits

Commits on Jun 24, 2024

• ingest: Add rules to run Nextclade on curated data

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  joverlee521

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  28d8e50

• ingest: join metadata and Nextclade output

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  joverlee521

  committed
  7c6b069

• ingest/nextclade: Remove output FASTA

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  joverlee521

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  bbc56af

• ingest: Upload Nextclade TSV output

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  joverlee521

  committed
  8adda40

• auspic_config_h5n*: Include Nextclade Clade as coloring/filter

  joverlee521

  committed
  43fba93