Code

Rewrite config syntax#104

Code

Draft

jameshadfield wants to merge 11 commits intojames/run-outside-of-reponextstrain/avian-flu:james/run-outside-of-repofrom james/update-config-syntaxnextstrain/avian-flu:james/update-config-syntaxCopy head branch name to clipboard

+474-328

Commits

Commits on Dec 12, 2024

• WIP Change config syntax

  Show description for c18c24c
  jameshadfield

  committed
  c18c24c

• Improve config.export.title structure

  Show description for 1aa36d2
  jameshadfield

  committed
  1aa36d2

• Improve config.traits structure

  Show description for 874bb5b
  jameshadfield

  committed
  874bb5b

• Improve config.refine structure

  Show description for 205d9c7
  jameshadfield

  committed
  205d9c7

• Improve config.ancestral structure

  Show description for d38ab35
  jameshadfield

  committed
  d38ab35

• Improve configs for genome reference

  Show description for 57ffa0f
  jameshadfield

  committed
  57ffa0f

• Refactor config.builds

  Show description for 68580e9
  jameshadfield

  committed
  68580e9

• Add config.target_patterns

  Show description for 5822b63
  jameshadfield

  committed
  5822b63

• Shift subtype lookups to config

  Show description for 3e33a1c
  jameshadfield

  committed
  3e33a1c

• Update max-sequences filtering parameter

  Show description for 585218f
  jameshadfield

  committed
  585218f

• WIP add docs to README

  Show description for c60554a
  jameshadfield

  committed
  c60554a