auspic_config_h5n*: Include Nextclade Clade as coloring/filter

nextstrain · Jun 24, 2024 · 43fba93 · 43fba93
1 parent 8adda40
commit 43fba93
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Showing 3 changed files with 19 additions and 1 deletion.
diff --git a/config/auspice_config_h5n1-cattle-outbreak.json b/config/auspice_config_h5n1-cattle-outbreak.json
@@ -80,6 +80,11 @@
       "title": "Subtype",
       "type": "categorical"
     },
+    {
+      "key": "clade",
+      "title": "Nextclade Clade",
+      "type": "categorical"
+    },
     {
       "key": "furin_cleavage_motif",
       "title": "Furin Cleavage Motif",
@@ -127,6 +132,7 @@
     "country",
     "division",
     "subtype",
+    "clade",
     "author",
     "originating_lab",
     "submitting_lab",

diff --git a/config/auspice_config_h5n1.json b/config/auspice_config_h5n1.json
@@ -39,7 +39,7 @@
       "key": "division",
       "title": "Admin Division",
       "type": "categorical"
-    },    
+    },
     {
       "key": "host",
       "title": "Host",
@@ -65,6 +65,11 @@
       "title": "GISAID Clade",
       "type": "categorical"
     },
+    {
+      "key": "clade",
+      "title": "Nextclade Clade",
+      "type": "categorical"
+    },
     {
       "key": "furin_cleavage_motif",
       "title": "Furin Cleavage Motif",
@@ -109,6 +114,7 @@
     "subtype",
     "h5_label_clade",
     "gisaid_clade",
+    "clade",
     "authors",
     "originating_lab",
     "submitting_lab"

diff --git a/config/auspice_config_h5nx.json b/config/auspice_config_h5nx.json
@@ -65,6 +65,11 @@
       "title": "GISAID Clade",
       "type": "categorical"
     },
+    {
+      "key": "clade",
+      "title": "Nextclade Clade",
+      "type": "categorical"
+    },
     {
       "key": "furin_cleavage_motif",
       "title": "Furin Cleavage Motif",
@@ -109,6 +114,7 @@
     "subtype",
     "h5_label_clade",
     "gisaid_clade",
+    "clade",
     "authors",
     "originating_lab",
     "submitting_lab"