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filter: Improve help text #1430

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@victorlin victorlin commented Mar 5, 2024

Description of proposed changes

Several touch-ups to improve the clarity of the help text shown when running augur filter --help and rendered on the docs page (preview).

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Checklist

  • Checks pass
  • Preview looks good (needs some work)
  • If making user-facing changes, add a message in CHANGES.md summarizing the changes in this PR

@victorlin victorlin self-assigned this Mar 5, 2024
@victorlin victorlin changed the base branch from master to victorlin/filter-max-length March 5, 2024 23:53
@victorlin victorlin mentioned this pull request Mar 5, 2024
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@victorlin victorlin force-pushed the victorlin/filter-help-text branch from 348613b to 592447e Compare March 6, 2024 00:17
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codecov bot commented Mar 6, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 68.66%. Comparing base (7c7353b) to head (a64c3e0).

Additional details and impacted files
@@                     Coverage Diff                      @@
##           victorlin/filter-max-length    #1430   +/-   ##
============================================================
  Coverage                        68.66%   68.66%           
============================================================
  Files                               69       69           
  Lines                             7554     7555    +1     
  Branches                          1851     1851           
============================================================
+ Hits                              5187     5188    +1     
  Misses                            2089     2089           
  Partials                           278      278           

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- Capitalize beginning of sentences and use periods at the end.
- Suppress defaults where the value is none/false.
- Add more meaningful metavars.
Other ways of saying this were 'sequence' and 'sample'. Note that
'sequence' is left as-is for the help text of sequence filters (e.g.
"length of the sequences").
Add reference to --metadata-id-columns which affects the behavior of
these options.
@victorlin victorlin force-pushed the victorlin/filter-help-text branch from 080b61c to a64c3e0 Compare March 6, 2024 00:57
Base automatically changed from victorlin/filter-max-length to master March 7, 2024 18:31
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