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huddlej committed Dec 23, 2024
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## __NEXT__

### Features

* ancestral: Add `--seed` argument to enable deterministic inference of root states by TreeTime. [#1690][] (@huddlej)

### Bug Fixes

* Explicitly specify how the root and ambiguous states are handled during sequence reconstruction and mutation counting. Fixes issue [#1689][] (@rneher) and was resolved in PR [#1690][].
* ancestral, refine: Explicitly specify how the root and ambiguous states are handled during sequence reconstruction and mutation counting. [#1690][] (@rneher)
* titers: Fix type errors in code associated with cross-validation of models. [#1688][] (@huddlej)

[#1688]: https://github.com/nextstrain/augur/pull/1688
[#1689]: https://github.com/nextstrain/augur/pull/1689
[#1690]: https://github.com/nextstrain/augur/pull/1690

## 27.0.0 (9 December 2024)
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### Features

- This is the first version to officially support Python 3.12 and Pandas v2. [#1671] [#1678] (@corneliusroemer, @victorlin)
- curate: change output metadata to [RFC 4180 CSV-like TSVs][] to match the TSV format output by other Augur subcommands and the Nextstrain ecosystem as discussed in [#1566][]. [#1565][] (@joverlee521)
* This is the first version to officially support Python 3.12 and Pandas v2. [#1671] [#1678] (@corneliusroemer, @victorlin)
* curate: change output metadata to [RFC 4180 CSV-like TSVs][] to match the TSV format output by other Augur subcommands and the Nextstrain ecosystem as discussed in [#1566][]. [#1565][] (@joverlee521)

[#1565]: https://github.com/nextstrain/augur/pull/1565
[#1566]: https://github.com/nextstrain/augur/issues/1566
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