Merge pull request #1523: Update docs for augur curate

nextstrain · Jul 9, 2024 · 493baeb · 493baeb
2 parents 25be480 + 09e2cc6
commit 493baeb
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diff --git a/docs/usage/cli/curate/abbreviate-authors.rst b/docs/usage/cli/curate/abbreviate-authors.rst
@@ -0,0 +1,9 @@
+==================
+abbreviate-authors
+==================
+
+.. argparse::
+    :module: augur
+    :func: make_parser
+    :prog: augur
+    :path: curate abbreviate-authors
diff --git a/docs/usage/cli/curate/apply-geolocation-rules.rst b/docs/usage/cli/curate/apply-geolocation-rules.rst
@@ -0,0 +1,9 @@
+=======================
+apply-geolocation-rules
+=======================
+
+.. argparse::
+    :module: augur
+    :func: make_parser
+    :prog: augur
+    :path: curate apply-geolocation-rules
diff --git a/docs/usage/cli/curate/apply-record-annotations.rst b/docs/usage/cli/curate/apply-record-annotations.rst
@@ -0,0 +1,9 @@
+========================
+apply-record-annotations
+========================
+
+.. argparse::
+    :module: augur
+    :func: make_parser
+    :prog: augur
+    :path: curate apply-record-annotations
diff --git a/docs/usage/cli/curate/index.rst b/docs/usage/cli/curate/index.rst
@@ -16,8 +16,13 @@ We will continue to add more subcommands as we identify other common data curati
 .. toctree::
     :maxdepth: 1
 
+    passthru
     normalize-strings
-    titlecase
     format-dates
-    passthru
+    titlecase
+    apply-geolocation-rules
+    apply-record-annotations
+    abbreviate-authors
+    parse-genbank-location
+    transform-strain-name
 
diff --git a/docs/usage/cli/curate/parse-genbank-location.rst b/docs/usage/cli/curate/parse-genbank-location.rst
@@ -0,0 +1,9 @@
+======================
+parse-genbank-location
+======================
+
+.. argparse::
+    :module: augur
+    :func: make_parser
+    :prog: augur
+    :path: curate parse-genbank-location
diff --git a/docs/usage/cli/curate/transform-strain-name.rst b/docs/usage/cli/curate/transform-strain-name.rst
@@ -0,0 +1,9 @@
+=====================
+transform-strain-name
+=====================
+
+.. argparse::
+    :module: augur
+    :func: make_parser
+    :prog: augur
+    :path: curate transform-strain-name