Align data for ancestral and translate tests

Updates data for augur translate functional tests to match the updated test data for the ancestral command.
nextstrain · Dec 18, 2024 · 01b1482 · 01b1482
1 parent 8c11ec9
commit 01b1482
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Showing 2 changed files with 10 additions and 8 deletions.
diff --git a/tests/functional/translate/cram/root-mutations.t b/tests/functional/translate/cram/root-mutations.t
@@ -28,4 +28,4 @@ is unchanged (MPCG*). There is also a mutation E4G at the root node to compensat
   >   "$DATA/aa_muts.json" \
   >   "aa_muts.json" \
   >   --exclude-regex-paths "root\['annotations'\]\['.+'\]\['seqid'\]" "root['meta']['updated']"
-  {'values_changed': {"root['reference']['gene1']": {'new_value': 'MPCE*', 'old_value': 'MPCG*'}}, 'iterable_item_added': {"root['nodes']['node_root']['aa_muts']['gene1'][0]": 'E4G'}}
+  {'values_changed': {"root['reference']['gene1']": {'new_value': 'MPCE*', 'old_value': 'MPCG*'}}, 'iterable_item_added': {"root['nodes']['node_root']['aa_muts']['gene1'][1]": 'E4G'}}
diff --git a/tests/functional/translate/data/simple-genome/aa_muts.json b/tests/functional/translate/data/simple-genome/aa_muts.json
@@ -29,21 +29,21 @@
   "nodes": {
     "node_AB": {
       "aa_muts": {
-        "gene1": [
-          "P2L"
-        ],
+        "gene1": [],
         "gene2": [
           "V2D"
         ]
       }
     },
     "node_root": {
       "aa_muts": {
-        "gene1": [],
+        "gene1": [
+          "P2L"
+        ],
         "gene2": []
       },
       "aa_sequences": {
-        "gene1": "MPCG*",
+        "gene1": "MLCG*",
         "gene2": "MVK*"
       }
     },
@@ -61,7 +61,9 @@
     },
     "sample_C": {
       "aa_muts": {
-        "gene1": [],
+        "gene1": [
+          "L2P"
+        ],
         "gene2": []
       }
     }
@@ -70,4 +72,4 @@
     "gene1": "MPCG*",
     "gene2": "MVK*"
   }
-}
+}