CI: Add new pathogens to `pathogen-repo-ci` #3115

Job	Run time
check-docs	36s
mypy	51s
pathogen-repo-ci (dengue)	2m 56s
pathogen-repo-ci (lassa)	7m 21s
pathogen-repo-ci-v0 (avian-flu)	1m 3s
pyright	16s
pathogen-repo-ci (measles)	1m 24s
pathogen-repo-ci-v0 (ebola)	56s
pathogen-repo-ci (mpox)	1m 25s
test (python=3.9 biopython=1.80)	13m 4s
pathogen-repo-ci-v0 (mumps)	54s
pathogen-repo-ci (oropouche)	1m 32s
test (python=3.9 biopython=1.82)	12m 38s
pathogen-repo-ci-v0 (ncov)	1m 7s
pathogen-repo-ci (rabies)	2m 22s
test (python=3.9 biopython=latest)	15m 3s
pathogen-repo-ci-v0 (rsv)	8m 29s
pathogen-repo-ci (seasonal-cov)	1m 50s
test (python=3.10 biopython=1.80)	13m 2s
pathogen-repo-ci-v0 (seasonal-flu)	1m 9s
pathogen-repo-ci (wnv)	1m 10s
test (python=3.10 biopython=1.82)	12m 45s
pathogen-repo-ci-v0 (tb)	1m 18s
pathogen-repo-ci (yellow-fever)	4m 14s
test (python=3.10 biopython=latest)	13m 8s
pathogen-repo-ci (zika)	1m 3s
test (python=3.11 biopython=1.80)	12m 41s
test (python=3.11 biopython=1.82)	13m 2s
test (python=3.11 biopython=latest)	12m 37s
test (python=3.12 biopython=1.82)	19m 39s
test (python=3.12 biopython=latest)	20m 0s
build-docs / build	2m 22s
codecov	10s
release	0s
rebuild-docker-image	0s
	3h 22m 7s

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