Remove unsupported pylint no-space-check option
#3111
huddlejci.yaml
on: pull_request
Matrix: pytest-cram
mypy
49s
pyright
20s
build-docs
/
build
2m 35s
check-docs
36s
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
10s
rebuild-docker-image
0s
Annotations
45 warnings
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pyright
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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check-docs
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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check-docs
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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mypy
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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pathogen-repo-ci-v0 (avian-flu)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (avian-flu)
Failed to save: Unable to reserve cache with key 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1702/merge, Key: 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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pathogen-repo-ci-v0 (ebola)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (ebola)
Failed to save: Unable to reserve cache with key 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1702/merge, Key: 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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pathogen-repo-ci (zika)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (zika)
Failed to save: Unable to reserve cache with key 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1702/merge, Key: 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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pathogen-repo-ci-v0 (ncov)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (ncov)
Failed to save: Unable to reserve cache with key 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1702/merge, Key: 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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pathogen-repo-ci-v0 (mumps)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (mumps)
Failed to save: Unable to reserve cache with key 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1702/merge, Key: 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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pathogen-repo-ci-v0 (seasonal-flu)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (seasonal-flu)
Failed to save: Unable to reserve cache with key 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1702/merge, Key: 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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pathogen-repo-ci (mpox)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (mpox)
Failed to save: Unable to reserve cache with key 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1702/merge, Key: 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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pathogen-repo-ci (measles)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (measles)
Failed to save: Unable to reserve cache with key 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1702/merge, Key: 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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pathogen-repo-ci-v0 (tb)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (tb)
Failed to save: Unable to reserve cache with key 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1702/merge, Key: 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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pathogen-repo-ci (seasonal-cov)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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build-docs / build
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (dengue)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (dengue)
Failed to save: Unable to reserve cache with key 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1702/merge, Key: 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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pathogen-repo-ci (lassa)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci (lassa)
Failed to save: Unable to reserve cache with key 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1702/merge, Key: 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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pathogen-repo-ci-v0 (rsv)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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pathogen-repo-ci-v0 (rsv)
Failed to save: Unable to reserve cache with key 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], another job may be creating this cache. More details: Cache already exists. Scope: refs/pull/1702/merge, Key: 2024-12-19-linux-64-augur-args-30d39f4-root-dcc80ee-bin-[object Promise], Version: 939591c2ddcc5f42a9b516a21218e7dd0d7bd1f9aa6ec5a1403b6d9c076f80ee
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test (python=3.10 biopython=1.80)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.11 biopython=1.80)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.9 biopython=1.80)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.11 biopython=1.82)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.10 biopython=1.82)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.11 biopython=latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.10 biopython=latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.9 biopython=1.82)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.9 biopython=latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.12 biopython=latest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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test (python=3.12 biopython=1.82)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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codecov
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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codecov
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
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Artifacts
Produced during runtime
| Name | Size | |
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coverage
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165 KB |
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output-avian-flu
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96.5 KB |
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output-dengue
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1.31 MB |
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output-ebola
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112 KB |
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output-lassa
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1.41 MB |
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output-measles
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3.87 MB |
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output-mpox
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12.8 MB |
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output-mumps
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340 KB |
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output-ncov
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710 KB |
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output-rsv
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9.47 MB |
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output-seasonal-cov
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1.57 MB |
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output-seasonal-flu
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53.9 KB |
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output-tb
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5.03 MB |
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output-zika
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745 KB |
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