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Update pathogen-repo-ci #485

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Update pathogen-repo-ci

Update pathogen-repo-ci #485

Triggered via pull request June 1, 2024 00:25
@genehackgenehack
synchronize #90
update-ci-89
Status Failure
Total duration 5m 4s
Artifacts 2

ci.yaml

on: pull_request
test-pathogen-repo-ci-no-example-data  /  configuration
2s
test-pathogen-repo-ci-no-example-data / configuration
test-pathogen-repo-ci-no-example-data  /  workflow-context
3s
test-pathogen-repo-ci-no-example-data / workflow-context
test-pathogen-repo-ci  /  configuration
4s
test-pathogen-repo-ci / configuration
test-pathogen-repo-ci  /  workflow-context
3s
test-pathogen-repo-ci / workflow-context
test-docs-ci-conda  /  build-conda
46s
test-docs-ci-conda / build-conda
test-docs-ci-conda  /  build-pip
0s
test-docs-ci-conda / build-pip
test-docs-ci-pip  /  build-conda
0s
test-docs-ci-pip / build-conda
test-docs-ci-pip  /  build-pip
59s
test-docs-ci-pip / build-pip
lint
6s
lint
Matrix: test-pathogen-repo-build
Matrix: test-setup-nextstrain-cli
Matrix: test-pathogen-repo-ci-no-example-data / nextstrain-build
Matrix: test-pathogen-repo-ci / nextstrain-build
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Annotations

1 error and 13 warnings
test-pathogen-repo-build (aws-batch) / run-build
Process completed with exit code 1.
test-pathogen-repo-ci / build (docker)
No files were found with the provided path: ingest/results/ ingest/benchmarks/ ingest/logs/ ingest/.snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci / build (docker)
No files were found with the provided path: phylogenetic/results/ phylogenetic/benchmarks/ phylogenetic/logs/ phylogenetic/.snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci / build (docker)
No files were found with the provided path: nextclade/results/ nextclade/benchmarks/ nextclade/logs/ nextclade/.snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci-no-example-data / build (docker)
No files were found with the provided path: ingest/results/ ingest/benchmarks/ ingest/logs/ ingest/.snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci-no-example-data / build (docker)
No files were found with the provided path: phylogenetic/results/ phylogenetic/benchmarks/ phylogenetic/logs/ phylogenetic/.snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci-no-example-data / build (docker)
No files were found with the provided path: nextclade/results/ nextclade/benchmarks/ nextclade/logs/ nextclade/.snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci-no-example-data / build (conda)
No files were found with the provided path: ingest/results/ ingest/benchmarks/ ingest/logs/ ingest/.snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci-no-example-data / build (conda)
No files were found with the provided path: phylogenetic/results/ phylogenetic/benchmarks/ phylogenetic/logs/ phylogenetic/.snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci-no-example-data / build (conda)
No files were found with the provided path: nextclade/results/ nextclade/benchmarks/ nextclade/logs/ nextclade/.snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci / build (conda)
No files were found with the provided path: ingest/results/ ingest/benchmarks/ ingest/logs/ ingest/.snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci / build (conda)
No files were found with the provided path: phylogenetic/results/ phylogenetic/benchmarks/ phylogenetic/logs/ phylogenetic/.snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci / build (conda)
No files were found with the provided path: nextclade/results/ nextclade/benchmarks/ nextclade/logs/ nextclade/.snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-build (aws-batch) / run-build
No files were found with the provided path: build.log auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size
build-output-conda Expired
152 KB
build-output-docker Expired
152 KB